miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12843 3' -53.5 NC_003387.1 + 13464 0.75 0.278144
Target:  5'- -cCAGCUCGcCGAGGUCGaacucgacggccUCGCCCGg -3'
miRNA:   3'- aaGUCGAGCaGCUUUAGC------------AGCGGGUg -5'
12843 3' -53.5 NC_003387.1 + 15010 0.7 0.554256
Target:  5'- cUCGGCUUGUCGcgcgggucggCGUCGUCCGa -3'
miRNA:   3'- aAGUCGAGCAGCuuua------GCAGCGGGUg -5'
12843 3' -53.5 NC_003387.1 + 15485 1.08 0.001474
Target:  5'- gUUCAGCUCGUCGAAAUCGUCGCCCACg -3'
miRNA:   3'- -AAGUCGAGCAGCUUUAGCAGCGGGUG- -5'
12843 3' -53.5 NC_003387.1 + 16016 0.69 0.603373
Target:  5'- -gCAGCUCGaccgggUCGAGAUUcagcUUGCCCGCg -3'
miRNA:   3'- aaGUCGAGC------AGCUUUAGc---AGCGGGUG- -5'
12843 3' -53.5 NC_003387.1 + 17006 0.68 0.637195
Target:  5'- -cCAGCUCGgucagCGGcaggccGUCGUCGCCgUACg -3'
miRNA:   3'- aaGUCGAGCa----GCUu-----UAGCAGCGG-GUG- -5'
12843 3' -53.5 NC_003387.1 + 17059 0.68 0.637195
Target:  5'- cUCAGCcaccgcccgCgGUCGAGGUCGgccagUGCCCGCc -3'
miRNA:   3'- aAGUCGa--------G-CAGCUUUAGCa----GCGGGUG- -5'
12843 3' -53.5 NC_003387.1 + 18589 0.71 0.462415
Target:  5'- ---uGCUCGUCGAGuUCG-CGCaCCGCg -3'
miRNA:   3'- aaguCGAGCAGCUUuAGCaGCG-GGUG- -5'
12843 3' -53.5 NC_003387.1 + 18732 0.68 0.659736
Target:  5'- -gCAGCUCGUCGucGAcCG-CGaCCCGCu -3'
miRNA:   3'- aaGUCGAGCAGCu-UUaGCaGC-GGGUG- -5'
12843 3' -53.5 NC_003387.1 + 19152 0.69 0.603373
Target:  5'- --uGGCUCGUCGAcgcuGUCGagggcgCGgCCCGCa -3'
miRNA:   3'- aagUCGAGCAGCUu---UAGCa-----GC-GGGUG- -5'
12843 3' -53.5 NC_003387.1 + 20558 0.67 0.704401
Target:  5'- gUCAGCUCGUC--AAUCugUGCCUGCa -3'
miRNA:   3'- aAGUCGAGCAGcuUUAGcaGCGGGUG- -5'
12843 3' -53.5 NC_003387.1 + 21647 0.69 0.569782
Target:  5'- gUCAGCUCGUCGAccgCGgcggCGgCCGa -3'
miRNA:   3'- aAGUCGAGCAGCUuuaGCa---GCgGGUg -5'
12843 3' -53.5 NC_003387.1 + 21713 0.68 0.645091
Target:  5'- -gCGGCccgcgccgaccuggUCGUgGAAAUCGUCGCCgAg -3'
miRNA:   3'- aaGUCG--------------AGCAgCUUUAGCAGCGGgUg -5'
12843 3' -53.5 NC_003387.1 + 22971 0.68 0.637195
Target:  5'- gUCAuGC-CGUCGgcGUCcagcUCGCCCGCg -3'
miRNA:   3'- aAGU-CGaGCAGCuuUAGc---AGCGGGUG- -5'
12843 3' -53.5 NC_003387.1 + 23042 0.66 0.779231
Target:  5'- cUCGGCcaCGUCGAcGUCGaCGUCgGCg -3'
miRNA:   3'- aAGUCGa-GCAGCUuUAGCaGCGGgUG- -5'
12843 3' -53.5 NC_003387.1 + 24156 0.66 0.747877
Target:  5'- --gGGCgUCGUCGAcggcGAUCGccgccucggUCGCCCAa -3'
miRNA:   3'- aagUCG-AGCAGCU----UUAGC---------AGCGGGUg -5'
12843 3' -53.5 NC_003387.1 + 24223 0.68 0.625912
Target:  5'- gUUAGCgUCGUCGugGUUGcCGCCgACg -3'
miRNA:   3'- aAGUCG-AGCAGCuuUAGCaGCGGgUG- -5'
12843 3' -53.5 NC_003387.1 + 24279 0.67 0.725248
Target:  5'- -cCAGCUCGUCGA--UCGUguacaccaugagcCGCCgCAg -3'
miRNA:   3'- aaGUCGAGCAGCUuuAGCA-------------GCGG-GUg -5'
12843 3' -53.5 NC_003387.1 + 24692 0.71 0.472708
Target:  5'- gUCAGCUCGcCGAgGAUCGgcUUGCCgCGCu -3'
miRNA:   3'- aAGUCGAGCaGCU-UUAGC--AGCGG-GUG- -5'
12843 3' -53.5 NC_003387.1 + 25991 0.66 0.758468
Target:  5'- ---cGCUCGcCGggGUCGcgauccagcUCGCgCCGCg -3'
miRNA:   3'- aaguCGAGCaGCuuUAGC---------AGCG-GGUG- -5'
12843 3' -53.5 NC_003387.1 + 26128 0.66 0.779231
Target:  5'- gUCGGCgCGUCc--GUCGcCGCUCGCg -3'
miRNA:   3'- aAGUCGaGCAGcuuUAGCaGCGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.