miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12843 3' -53.5 NC_003387.1 + 488 0.72 0.422476
Target:  5'- -gCuGCUCGUCGcGAUgCG-CGCCCGCg -3'
miRNA:   3'- aaGuCGAGCAGCuUUA-GCaGCGGGUG- -5'
12843 3' -53.5 NC_003387.1 + 35110 0.67 0.715412
Target:  5'- -cCGGCUCGUCGAGGacaaCGUcaugcCGCCUAa -3'
miRNA:   3'- aaGUCGAGCAGCUUUa---GCA-----GCGGGUg -5'
12843 3' -53.5 NC_003387.1 + 26700 0.69 0.603373
Target:  5'- -gCuGCUCGUCGAcgcCGUCGUgCGCg -3'
miRNA:   3'- aaGuCGAGCAGCUuuaGCAGCGgGUG- -5'
12843 3' -53.5 NC_003387.1 + 18589 0.71 0.462415
Target:  5'- ---uGCUCGUCGAGuUCG-CGCaCCGCg -3'
miRNA:   3'- aaguCGAGCAGCUUuAGCaGCG-GGUG- -5'
12843 3' -53.5 NC_003387.1 + 25991 0.66 0.758468
Target:  5'- ---cGCUCGcCGggGUCGcgauccagcUCGCgCCGCg -3'
miRNA:   3'- aaguCGAGCaGCuuUAGC---------AGCG-GGUG- -5'
12843 3' -53.5 NC_003387.1 + 3614 0.67 0.715412
Target:  5'- -aCAGCgggugcgCGUCGAGGugcucgacuUCGUaCGCCUGCg -3'
miRNA:   3'- aaGUCGa------GCAGCUUU---------AGCA-GCGGGUG- -5'
12843 3' -53.5 NC_003387.1 + 34206 0.66 0.789378
Target:  5'- -aCAGCgccaCGUCGcgGUCGgUGCCCGg -3'
miRNA:   3'- aaGUCGa---GCAGCuuUAGCaGCGGGUg -5'
12843 3' -53.5 NC_003387.1 + 10186 0.69 0.596628
Target:  5'- -cCAGCUCGgcgUCGGucaugcgggccgcguGAUCgGUCGCCCAg -3'
miRNA:   3'- aaGUCGAGC---AGCU---------------UUAG-CAGCGGGUg -5'
12843 3' -53.5 NC_003387.1 + 16016 0.69 0.603373
Target:  5'- -gCAGCUCGaccgggUCGAGAUUcagcUUGCCCGCg -3'
miRNA:   3'- aaGUCGAGC------AGCUUUAGc---AGCGGGUG- -5'
12843 3' -53.5 NC_003387.1 + 44023 0.69 0.614635
Target:  5'- -gCGGCUCGUCGAcGUCgGUCGgCaGCg -3'
miRNA:   3'- aaGUCGAGCAGCUuUAG-CAGCgGgUG- -5'
12843 3' -53.5 NC_003387.1 + 46967 0.67 0.715412
Target:  5'- aUCAGCUCGUCGGccGAggCGUUcaGCUCGu -3'
miRNA:   3'- aAGUCGAGCAGCU--UUa-GCAG--CGGGUg -5'
12843 3' -53.5 NC_003387.1 + 51418 0.67 0.715412
Target:  5'- -----gUCGUCGA---CGUCGCCCGCc -3'
miRNA:   3'- aagucgAGCAGCUuuaGCAGCGGGUG- -5'
12843 3' -53.5 NC_003387.1 + 24279 0.67 0.725248
Target:  5'- -cCAGCUCGUCGA--UCGUguacaccaugagcCGCCgCAg -3'
miRNA:   3'- aaGUCGAGCAGCUuuAGCA-------------GCGG-GUg -5'
12843 3' -53.5 NC_003387.1 + 316 0.66 0.779231
Target:  5'- -aCAGCggGUCGAGGUgGUCGgCCu- -3'
miRNA:   3'- aaGUCGagCAGCUUUAgCAGCgGGug -5'
12843 3' -53.5 NC_003387.1 + 17059 0.68 0.637195
Target:  5'- cUCAGCcaccgcccgCgGUCGAGGUCGgccagUGCCCGCc -3'
miRNA:   3'- aAGUCGa--------G-CAGCUUUAGCa----GCGGGUG- -5'
12843 3' -53.5 NC_003387.1 + 17006 0.68 0.637195
Target:  5'- -cCAGCUCGgucagCGGcaggccGUCGUCGCCgUACg -3'
miRNA:   3'- aaGUCGAGCa----GCUu-----UAGCAGCGG-GUG- -5'
12843 3' -53.5 NC_003387.1 + 24223 0.68 0.625912
Target:  5'- gUUAGCgUCGUCGugGUUGcCGCCgACg -3'
miRNA:   3'- aAGUCG-AGCAGCuuUAGCaGCGGgUG- -5'
12843 3' -53.5 NC_003387.1 + 10908 0.69 0.619144
Target:  5'- cUCAGCUCGUCGAugaucugccaggCGUgCGCCagguCGCg -3'
miRNA:   3'- aAGUCGAGCAGCUuua---------GCA-GCGG----GUG- -5'
12843 3' -53.5 NC_003387.1 + 33744 0.69 0.614635
Target:  5'- -cCAGCUCGUCGAugcUCGccggggUGCCgACg -3'
miRNA:   3'- aaGUCGAGCAGCUuu-AGCa-----GCGGgUG- -5'
12843 3' -53.5 NC_003387.1 + 5467 0.69 0.614635
Target:  5'- gUCAGCUCGggcagaUCGuucaaGUCGCCCGg -3'
miRNA:   3'- aAGUCGAGC------AGCuuuagCAGCGGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.