miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12843 3' -53.5 NC_003387.1 + 37296 0.74 0.332348
Target:  5'- ---cGCUCGUCGGcgcGGUCGUCGaCCGCg -3'
miRNA:   3'- aaguCGAGCAGCU---UUAGCAGCgGGUG- -5'
12843 3' -53.5 NC_003387.1 + 35110 0.67 0.715412
Target:  5'- -cCGGCUCGUCGAGGacaaCGUcaugcCGCCUAa -3'
miRNA:   3'- aaGUCGAGCAGCUUUa---GCA-----GCGGGUg -5'
12843 3' -53.5 NC_003387.1 + 35593 0.67 0.737162
Target:  5'- --gAGCUgGUCGAcacagCGaUCGCCUACg -3'
miRNA:   3'- aagUCGAgCAGCUuua--GC-AGCGGGUG- -5'
12843 3' -53.5 NC_003387.1 + 33468 0.66 0.789378
Target:  5'- -gCGGCcgaagUCGcCGAGgcgGUCGgCGCCCGCg -3'
miRNA:   3'- aaGUCG-----AGCaGCUU---UAGCaGCGGGUG- -5'
12843 3' -53.5 NC_003387.1 + 27097 0.71 0.476857
Target:  5'- gUCGGCaUCGUCGuccuggugcuguUCGUCGUCUACg -3'
miRNA:   3'- aAGUCG-AGCAGCuuu---------AGCAGCGGGUG- -5'
12843 3' -53.5 NC_003387.1 + 49801 0.7 0.514968
Target:  5'- -gCAGUUCGaCGAGAgCcUCGCCCGCg -3'
miRNA:   3'- aaGUCGAGCaGCUUUaGcAGCGGGUG- -5'
12843 3' -53.5 NC_003387.1 + 8531 0.7 0.55868
Target:  5'- -cCGGCUCG-CGGGuaguuaGUUGCCCGCg -3'
miRNA:   3'- aaGUCGAGCaGCUUuag---CAGCGGGUG- -5'
12843 3' -53.5 NC_003387.1 + 21647 0.69 0.569782
Target:  5'- gUCAGCUCGUCGAccgCGgcggCGgCCGa -3'
miRNA:   3'- aAGUCGAGCAGCUuuaGCa---GCgGGUg -5'
12843 3' -53.5 NC_003387.1 + 21713 0.68 0.645091
Target:  5'- -gCGGCccgcgccgaccuggUCGUgGAAAUCGUCGCCgAg -3'
miRNA:   3'- aaGUCG--------------AGCAgCUUUAGCAGCGGgUg -5'
12843 3' -53.5 NC_003387.1 + 51900 0.67 0.693316
Target:  5'- --aAGCUCGUCGAGGU-GcUGCCCGa -3'
miRNA:   3'- aagUCGAGCAGCUUUAgCaGCGGGUg -5'
12843 3' -53.5 NC_003387.1 + 18732 0.68 0.659736
Target:  5'- -gCAGCUCGUCGucGAcCG-CGaCCCGCu -3'
miRNA:   3'- aaGUCGAGCAGCu-UUaGCaGC-GGGUG- -5'
12843 3' -53.5 NC_003387.1 + 26700 0.69 0.603373
Target:  5'- -gCuGCUCGUCGAcgcCGUCGUgCGCg -3'
miRNA:   3'- aaGuCGAGCAGCUuuaGCAGCGgGUG- -5'
12843 3' -53.5 NC_003387.1 + 51303 0.72 0.403299
Target:  5'- -cCAGCUCGUCGGcggCGgCGCCuCGCa -3'
miRNA:   3'- aaGUCGAGCAGCUuuaGCaGCGG-GUG- -5'
12843 3' -53.5 NC_003387.1 + 48447 0.68 0.659736
Target:  5'- -gCAGUUCaUCGAGGguuaCGUCGaCCCGCu -3'
miRNA:   3'- aaGUCGAGcAGCUUUa---GCAGC-GGGUG- -5'
12843 3' -53.5 NC_003387.1 + 488 0.72 0.422476
Target:  5'- -gCuGCUCGUCGcGAUgCG-CGCCCGCg -3'
miRNA:   3'- aaGuCGAGCAGCuUUA-GCaGCGGGUG- -5'
12843 3' -53.5 NC_003387.1 + 19152 0.69 0.603373
Target:  5'- --uGGCUCGUCGAcgcuGUCGagggcgCGgCCCGCa -3'
miRNA:   3'- aagUCGAGCAGCUu---UAGCa-----GC-GGGUG- -5'
12843 3' -53.5 NC_003387.1 + 50407 0.68 0.682169
Target:  5'- --gAGCUguaCGUCGGgcggcaGAUCGUCGCCUcgGCg -3'
miRNA:   3'- aagUCGA---GCAGCU------UUAGCAGCGGG--UG- -5'
12843 3' -53.5 NC_003387.1 + 49192 0.67 0.726336
Target:  5'- -gCGGC-CGUCGAcGUUGcugaGCCCGCa -3'
miRNA:   3'- aaGUCGaGCAGCUuUAGCag--CGGGUG- -5'
12843 3' -53.5 NC_003387.1 + 18589 0.71 0.462415
Target:  5'- ---uGCUCGUCGAGuUCG-CGCaCCGCg -3'
miRNA:   3'- aaguCGAGCAGCUUuAGCaGCG-GGUG- -5'
12843 3' -53.5 NC_003387.1 + 13004 0.7 0.54764
Target:  5'- --aGGCgUCGUCGGgcaaGGUCGacagCGCCCGCa -3'
miRNA:   3'- aagUCG-AGCAGCU----UUAGCa---GCGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.