miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12843 3' -53.5 NC_003387.1 + 15485 1.08 0.001474
Target:  5'- gUUCAGCUCGUCGAAAUCGUCGCCCACg -3'
miRNA:   3'- -AAGUCGAGCAGCUUUAGCAGCGGGUG- -5'
12843 3' -53.5 NC_003387.1 + 42703 0.91 0.023749
Target:  5'- cUUCGGCUCGUCGucGUCGUCGCCCGg -3'
miRNA:   3'- -AAGUCGAGCAGCuuUAGCAGCGGGUg -5'
12843 3' -53.5 NC_003387.1 + 49437 0.82 0.099473
Target:  5'- gUCGGCggccgUGUCGggGUCGUCGUCCAUu -3'
miRNA:   3'- aAGUCGa----GCAGCuuUAGCAGCGGGUG- -5'
12843 3' -53.5 NC_003387.1 + 5742 0.8 0.14049
Target:  5'- ---cGCUCGUCG---UCGUCGCCCGCa -3'
miRNA:   3'- aaguCGAGCAGCuuuAGCAGCGGGUG- -5'
12843 3' -53.5 NC_003387.1 + 7948 0.76 0.250462
Target:  5'- -cCAGCUUGUCGAGGUCGggcCGCUuCACg -3'
miRNA:   3'- aaGUCGAGCAGCUUUAGCa--GCGG-GUG- -5'
12843 3' -53.5 NC_003387.1 + 13464 0.75 0.278144
Target:  5'- -cCAGCUCGcCGAGGUCGaacucgacggccUCGCCCGg -3'
miRNA:   3'- aaGUCGAGCaGCUUUAGC------------AGCGGGUg -5'
12843 3' -53.5 NC_003387.1 + 11759 0.75 0.285435
Target:  5'- uUUCAGCUCGgccUCGAucgCGUCGCgCACc -3'
miRNA:   3'- -AAGUCGAGC---AGCUuuaGCAGCGgGUG- -5'
12843 3' -53.5 NC_003387.1 + 51931 0.75 0.300468
Target:  5'- aUCAGCUUGcCGAGGUCGUCcugCCACa -3'
miRNA:   3'- aAGUCGAGCaGCUUUAGCAGcg-GGUG- -5'
12843 3' -53.5 NC_003387.1 + 43295 0.74 0.308211
Target:  5'- cUCGGCgcccgCGUCGuacUCGUCGgCCCACu -3'
miRNA:   3'- aAGUCGa----GCAGCuuuAGCAGC-GGGUG- -5'
12843 3' -53.5 NC_003387.1 + 37296 0.74 0.332348
Target:  5'- ---cGCUCGUCGGcgcGGUCGUCGaCCGCg -3'
miRNA:   3'- aaguCGAGCAGCU---UUAGCAGCgGGUG- -5'
12843 3' -53.5 NC_003387.1 + 11431 0.73 0.384682
Target:  5'- ---cGCUCGUCGAGGuuucgcUCGUCGCCguCg -3'
miRNA:   3'- aaguCGAGCAGCUUU------AGCAGCGGguG- -5'
12843 3' -53.5 NC_003387.1 + 26202 0.72 0.403299
Target:  5'- -aCGGCUCGUCG---UCGUCgGCCuCGCa -3'
miRNA:   3'- aaGUCGAGCAGCuuuAGCAG-CGG-GUG- -5'
12843 3' -53.5 NC_003387.1 + 51303 0.72 0.403299
Target:  5'- -cCAGCUCGUCGGcggCGgCGCCuCGCa -3'
miRNA:   3'- aaGUCGAGCAGCUuuaGCaGCGG-GUG- -5'
12843 3' -53.5 NC_003387.1 + 41603 0.72 0.412819
Target:  5'- gUCAGCUUGUCGAAca---CGCCCAUa -3'
miRNA:   3'- aAGUCGAGCAGCUUuagcaGCGGGUG- -5'
12843 3' -53.5 NC_003387.1 + 32882 0.72 0.412819
Target:  5'- gUCGGCgUCGUCGAgaGAUUGauUCGaCCCGCg -3'
miRNA:   3'- aAGUCG-AGCAGCU--UUAGC--AGC-GGGUG- -5'
12843 3' -53.5 NC_003387.1 + 488 0.72 0.422476
Target:  5'- -gCuGCUCGUCGcGAUgCG-CGCCCGCg -3'
miRNA:   3'- aaGuCGAGCAGCuUUA-GCaGCGGGUG- -5'
12843 3' -53.5 NC_003387.1 + 1387 0.72 0.422476
Target:  5'- cUCAGCggGUCGggGUCG-CGCUCGa -3'
miRNA:   3'- aAGUCGagCAGCuuUAGCaGCGGGUg -5'
12843 3' -53.5 NC_003387.1 + 48164 0.72 0.422476
Target:  5'- -gCAGCUUGUCGGccuuGUCGuagUCGCCCGu -3'
miRNA:   3'- aaGUCGAGCAGCUu---UAGC---AGCGGGUg -5'
12843 3' -53.5 NC_003387.1 + 35447 0.71 0.452241
Target:  5'- gUUAGCU-GUCGggGUCGUCGUCgAa -3'
miRNA:   3'- aAGUCGAgCAGCuuUAGCAGCGGgUg -5'
12843 3' -53.5 NC_003387.1 + 18589 0.71 0.462415
Target:  5'- ---uGCUCGUCGAGuUCG-CGCaCCGCg -3'
miRNA:   3'- aaguCGAGCAGCUUuAGCaGCG-GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.