Results 1 - 20 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12843 | 3' | -53.5 | NC_003387.1 | + | 40308 | 0.66 | 0.790383 |
Target: 5'- aUCAGCUCccacagcggcgcacCGGAGUUGaUCGCCUGCa -3' miRNA: 3'- aAGUCGAGca------------GCUUUAGC-AGCGGGUG- -5' |
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12843 | 3' | -53.5 | NC_003387.1 | + | 33468 | 0.66 | 0.789378 |
Target: 5'- -gCGGCcgaagUCGcCGAGgcgGUCGgCGCCCGCg -3' miRNA: 3'- aaGUCG-----AGCaGCUU---UAGCaGCGGGUG- -5' |
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12843 | 3' | -53.5 | NC_003387.1 | + | 30936 | 0.66 | 0.789378 |
Target: 5'- -cCGGC-CGUCGcAGAUCGU-GCgCCGCu -3' miRNA: 3'- aaGUCGaGCAGC-UUUAGCAgCG-GGUG- -5' |
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12843 | 3' | -53.5 | NC_003387.1 | + | 26128 | 0.66 | 0.779231 |
Target: 5'- gUCGGCgCGUCc--GUCGcCGCUCGCg -3' miRNA: 3'- aAGUCGaGCAGcuuUAGCaGCGGGUG- -5' |
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12843 | 3' | -53.5 | NC_003387.1 | + | 2176 | 0.66 | 0.789378 |
Target: 5'- -gCAGCUCGgCGccuUgGUCGCCgACa -3' miRNA: 3'- aaGUCGAGCaGCuuuAgCAGCGGgUG- -5' |
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12843 | 3' | -53.5 | NC_003387.1 | + | 24156 | 0.66 | 0.747877 |
Target: 5'- --gGGCgUCGUCGAcggcGAUCGccgccucggUCGCCCAa -3' miRNA: 3'- aagUCG-AGCAGCU----UUAGC---------AGCGGGUg -5' |
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12843 | 3' | -53.5 | NC_003387.1 | + | 4765 | 0.66 | 0.747877 |
Target: 5'- -cCAGCUCG-CGGugcuUCG-CGgCCCACa -3' miRNA: 3'- aaGUCGAGCaGCUuu--AGCaGC-GGGUG- -5' |
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12843 | 3' | -53.5 | NC_003387.1 | + | 25991 | 0.66 | 0.758468 |
Target: 5'- ---cGCUCGcCGggGUCGcgauccagcUCGCgCCGCg -3' miRNA: 3'- aaguCGAGCaGCuuUAGC---------AGCG-GGUG- -5' |
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12843 | 3' | -53.5 | NC_003387.1 | + | 316 | 0.66 | 0.779231 |
Target: 5'- -aCAGCggGUCGAGGUgGUCGgCCu- -3' miRNA: 3'- aaGUCGagCAGCUUUAgCAGCgGGug -5' |
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12843 | 3' | -53.5 | NC_003387.1 | + | 51365 | 0.66 | 0.779231 |
Target: 5'- --gAGCggUCGUCGggGUCGgCGUCCuCg -3' miRNA: 3'- aagUCG--AGCAGCuuUAGCaGCGGGuG- -5' |
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12843 | 3' | -53.5 | NC_003387.1 | + | 23042 | 0.66 | 0.779231 |
Target: 5'- cUCGGCcaCGUCGAcGUCGaCGUCgGCg -3' miRNA: 3'- aAGUCGa-GCAGCUuUAGCaGCGGgUG- -5' |
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12843 | 3' | -53.5 | NC_003387.1 | + | 50428 | 0.66 | 0.789378 |
Target: 5'- -cCAGUUCcUUGAcuUCGUCGCUgGCg -3' miRNA: 3'- aaGUCGAGcAGCUuuAGCAGCGGgUG- -5' |
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12843 | 3' | -53.5 | NC_003387.1 | + | 34206 | 0.66 | 0.789378 |
Target: 5'- -aCAGCgccaCGUCGcgGUCGgUGCCCGg -3' miRNA: 3'- aaGUCGa---GCAGCuuUAGCaGCGGGUg -5' |
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12843 | 3' | -53.5 | NC_003387.1 | + | 35110 | 0.67 | 0.715412 |
Target: 5'- -cCGGCUCGUCGAGGacaaCGUcaugcCGCCUAa -3' miRNA: 3'- aaGUCGAGCAGCUUUa---GCA-----GCGGGUg -5' |
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12843 | 3' | -53.5 | NC_003387.1 | + | 51900 | 0.67 | 0.693316 |
Target: 5'- --aAGCUCGUCGAGGU-GcUGCCCGa -3' miRNA: 3'- aagUCGAGCAGCUUUAgCaGCGGGUg -5' |
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12843 | 3' | -53.5 | NC_003387.1 | + | 20558 | 0.67 | 0.704401 |
Target: 5'- gUCAGCUCGUC--AAUCugUGCCUGCa -3' miRNA: 3'- aAGUCGAGCAGcuUUAGcaGCGGGUG- -5' |
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12843 | 3' | -53.5 | NC_003387.1 | + | 3614 | 0.67 | 0.715412 |
Target: 5'- -aCAGCgggugcgCGUCGAGGugcucgacuUCGUaCGCCUGCg -3' miRNA: 3'- aaGUCGa------GCAGCUUU---------AGCA-GCGGGUG- -5' |
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12843 | 3' | -53.5 | NC_003387.1 | + | 46967 | 0.67 | 0.715412 |
Target: 5'- aUCAGCUCGUCGGccGAggCGUUcaGCUCGu -3' miRNA: 3'- aAGUCGAGCAGCU--UUa-GCAG--CGGGUg -5' |
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12843 | 3' | -53.5 | NC_003387.1 | + | 51418 | 0.67 | 0.715412 |
Target: 5'- -----gUCGUCGA---CGUCGCCCGCc -3' miRNA: 3'- aagucgAGCAGCUuuaGCAGCGGGUG- -5' |
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12843 | 3' | -53.5 | NC_003387.1 | + | 24279 | 0.67 | 0.725248 |
Target: 5'- -cCAGCUCGUCGA--UCGUguacaccaugagcCGCCgCAg -3' miRNA: 3'- aaGUCGAGCAGCUuuAGCA-------------GCGG-GUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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