miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12843 3' -53.5 NC_003387.1 + 33744 0.69 0.614635
Target:  5'- -cCAGCUCGUCGAugcUCGccggggUGCCgACg -3'
miRNA:   3'- aaGUCGAGCAGCUuu-AGCa-----GCGGgUG- -5'
12843 3' -53.5 NC_003387.1 + 19152 0.69 0.603373
Target:  5'- --uGGCUCGUCGAcgcuGUCGagggcgCGgCCCGCa -3'
miRNA:   3'- aagUCGAGCAGCUu---UAGCa-----GC-GGGUG- -5'
12843 3' -53.5 NC_003387.1 + 16016 0.69 0.603373
Target:  5'- -gCAGCUCGaccgggUCGAGAUUcagcUUGCCCGCg -3'
miRNA:   3'- aaGUCGAGC------AGCUUUAGc---AGCGGGUG- -5'
12843 3' -53.5 NC_003387.1 + 26700 0.69 0.603373
Target:  5'- -gCuGCUCGUCGAcgcCGUCGUgCGCg -3'
miRNA:   3'- aaGuCGAGCAGCUuuaGCAGCGgGUG- -5'
12843 3' -53.5 NC_003387.1 + 10186 0.69 0.596628
Target:  5'- -cCAGCUCGgcgUCGGucaugcgggccgcguGAUCgGUCGCCCAg -3'
miRNA:   3'- aaGUCGAGC---AGCU---------------UUAG-CAGCGGGUg -5'
12843 3' -53.5 NC_003387.1 + 1449 0.69 0.580938
Target:  5'- cUCGGggucgucgucCUCGUCGAGGUCGUCGagggCCAg -3'
miRNA:   3'- aAGUC----------GAGCAGCUUUAGCAGCg---GGUg -5'
12843 3' -53.5 NC_003387.1 + 34817 0.69 0.569782
Target:  5'- gUCGGgggCGUCGAGAauguUCGUCgacgGCCCGCg -3'
miRNA:   3'- aAGUCga-GCAGCUUU----AGCAG----CGGGUG- -5'
12843 3' -53.5 NC_003387.1 + 21647 0.69 0.569782
Target:  5'- gUCAGCUCGUCGAccgCGgcggCGgCCGa -3'
miRNA:   3'- aAGUCGAGCAGCUuuaGCa---GCgGGUg -5'
12843 3' -53.5 NC_003387.1 + 8531 0.7 0.55868
Target:  5'- -cCGGCUCG-CGGGuaguuaGUUGCCCGCg -3'
miRNA:   3'- aaGUCGAGCaGCUUuag---CAGCGGGUG- -5'
12843 3' -53.5 NC_003387.1 + 15010 0.7 0.554256
Target:  5'- cUCGGCUUGUCGcgcgggucggCGUCGUCCGa -3'
miRNA:   3'- aAGUCGAGCAGCuuua------GCAGCGGGUg -5'
12843 3' -53.5 NC_003387.1 + 13004 0.7 0.54764
Target:  5'- --aGGCgUCGUCGGgcaaGGUCGacagCGCCCGCa -3'
miRNA:   3'- aagUCG-AGCAGCU----UUAGCa---GCGGGUG- -5'
12843 3' -53.5 NC_003387.1 + 30249 0.7 0.53667
Target:  5'- -cCGGgUCGUCGggGUCGgCGCCgGg -3'
miRNA:   3'- aaGUCgAGCAGCuuUAGCaGCGGgUg -5'
12843 3' -53.5 NC_003387.1 + 5953 0.7 0.53667
Target:  5'- aUCAGCUCGcCGAAccgcgaGUCGcUCGaCCCGg -3'
miRNA:   3'- aAGUCGAGCaGCUU------UAGC-AGC-GGGUg -5'
12843 3' -53.5 NC_003387.1 + 35601 0.7 0.525777
Target:  5'- gUCgAGgUCGUCGAg--CGUCGCCCcCg -3'
miRNA:   3'- aAG-UCgAGCAGCUuuaGCAGCGGGuG- -5'
12843 3' -53.5 NC_003387.1 + 49801 0.7 0.514968
Target:  5'- -gCAGUUCGaCGAGAgCcUCGCCCGCg -3'
miRNA:   3'- aaGUCGAGCaGCUUUaGcAGCGGGUG- -5'
12843 3' -53.5 NC_003387.1 + 47176 0.71 0.492575
Target:  5'- cUUgAGCUgGUCGuAAUCGccgaacuUCGCCCGCu -3'
miRNA:   3'- -AAgUCGAgCAGCuUUAGC-------AGCGGGUG- -5'
12843 3' -53.5 NC_003387.1 + 35627 0.71 0.479981
Target:  5'- -cCAGCUCGUCGucgauAGUguugggggcguugaCGUCGaCCCACu -3'
miRNA:   3'- aaGUCGAGCAGCu----UUA--------------GCAGC-GGGUG- -5'
12843 3' -53.5 NC_003387.1 + 27097 0.71 0.476857
Target:  5'- gUCGGCaUCGUCGuccuggugcuguUCGUCGUCUACg -3'
miRNA:   3'- aAGUCG-AGCAGCuuu---------AGCAGCGGGUG- -5'
12843 3' -53.5 NC_003387.1 + 46268 0.71 0.472708
Target:  5'- gUCGGaCUCGUUGGcgaCGcCGCCCACg -3'
miRNA:   3'- aAGUC-GAGCAGCUuuaGCaGCGGGUG- -5'
12843 3' -53.5 NC_003387.1 + 24692 0.71 0.472708
Target:  5'- gUCAGCUCGcCGAgGAUCGgcUUGCCgCGCu -3'
miRNA:   3'- aAGUCGAGCaGCU-UUAGC--AGCGG-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.