miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12843 3' -53.5 NC_003387.1 + 51418 0.67 0.715412
Target:  5'- -----gUCGUCGA---CGUCGCCCGCc -3'
miRNA:   3'- aagucgAGCAGCUuuaGCAGCGGGUG- -5'
12843 3' -53.5 NC_003387.1 + 46967 0.67 0.715412
Target:  5'- aUCAGCUCGUCGGccGAggCGUUcaGCUCGu -3'
miRNA:   3'- aAGUCGAGCAGCU--UUa-GCAG--CGGGUg -5'
12843 3' -53.5 NC_003387.1 + 20558 0.67 0.704401
Target:  5'- gUCAGCUCGUC--AAUCugUGCCUGCa -3'
miRNA:   3'- aAGUCGAGCAGcuUUAGcaGCGGGUG- -5'
12843 3' -53.5 NC_003387.1 + 44677 0.67 0.693316
Target:  5'- -cCAGCUCGUCGAGcagauaggcUCGcgCGgCCACc -3'
miRNA:   3'- aaGUCGAGCAGCUUu--------AGCa-GCgGGUG- -5'
12843 3' -53.5 NC_003387.1 + 51900 0.67 0.693316
Target:  5'- --aAGCUCGUCGAGGU-GcUGCCCGa -3'
miRNA:   3'- aagUCGAGCAGCUUUAgCaGCGGGUg -5'
12843 3' -53.5 NC_003387.1 + 50407 0.68 0.682169
Target:  5'- --gAGCUguaCGUCGGgcggcaGAUCGUCGCCUcgGCg -3'
miRNA:   3'- aagUCGA---GCAGCU------UUAGCAGCGGG--UG- -5'
12843 3' -53.5 NC_003387.1 + 39744 0.68 0.682169
Target:  5'- --aAGCUCGUCGucGGUgGcCGCCCGg -3'
miRNA:   3'- aagUCGAGCAGCu-UUAgCaGCGGGUg -5'
12843 3' -53.5 NC_003387.1 + 48447 0.68 0.659736
Target:  5'- -gCAGUUCaUCGAGGguuaCGUCGaCCCGCu -3'
miRNA:   3'- aaGUCGAGcAGCUUUa---GCAGC-GGGUG- -5'
12843 3' -53.5 NC_003387.1 + 6634 0.68 0.659736
Target:  5'- gUCGGCggcCGUCuuGGGcucGUCGUCGaCCCGCu -3'
miRNA:   3'- aAGUCGa--GCAG--CUU---UAGCAGC-GGGUG- -5'
12843 3' -53.5 NC_003387.1 + 18732 0.68 0.659736
Target:  5'- -gCAGCUCGUCGucGAcCG-CGaCCCGCu -3'
miRNA:   3'- aaGUCGAGCAGCu-UUaGCaGC-GGGUG- -5'
12843 3' -53.5 NC_003387.1 + 11415 0.68 0.648474
Target:  5'- aUCGGCcccgaggugcugUCGUCGGugcUCGU-GCCCGCg -3'
miRNA:   3'- aAGUCG------------AGCAGCUuu-AGCAgCGGGUG- -5'
12843 3' -53.5 NC_003387.1 + 29339 0.68 0.647346
Target:  5'- gUUCAGCUCGUCGGcgacccgAAUCaGcUCGgCCAUc -3'
miRNA:   3'- -AAGUCGAGCAGCU-------UUAG-C-AGCgGGUG- -5'
12843 3' -53.5 NC_003387.1 + 21713 0.68 0.645091
Target:  5'- -gCGGCccgcgccgaccuggUCGUgGAAAUCGUCGCCgAg -3'
miRNA:   3'- aaGUCG--------------AGCAgCUUUAGCAGCGGgUg -5'
12843 3' -53.5 NC_003387.1 + 17059 0.68 0.637195
Target:  5'- cUCAGCcaccgcccgCgGUCGAGGUCGgccagUGCCCGCc -3'
miRNA:   3'- aAGUCGa--------G-CAGCUUUAGCa----GCGGGUG- -5'
12843 3' -53.5 NC_003387.1 + 17006 0.68 0.637195
Target:  5'- -cCAGCUCGgucagCGGcaggccGUCGUCGCCgUACg -3'
miRNA:   3'- aaGUCGAGCa----GCUu-----UAGCAGCGG-GUG- -5'
12843 3' -53.5 NC_003387.1 + 22971 0.68 0.637195
Target:  5'- gUCAuGC-CGUCGgcGUCcagcUCGCCCGCg -3'
miRNA:   3'- aAGU-CGaGCAGCuuUAGc---AGCGGGUG- -5'
12843 3' -53.5 NC_003387.1 + 24223 0.68 0.625912
Target:  5'- gUUAGCgUCGUCGugGUUGcCGCCgACg -3'
miRNA:   3'- aAGUCG-AGCAGCuuUAGCaGCGGgUG- -5'
12843 3' -53.5 NC_003387.1 + 10908 0.69 0.619144
Target:  5'- cUCAGCUCGUCGAugaucugccaggCGUgCGCCagguCGCg -3'
miRNA:   3'- aAGUCGAGCAGCUuua---------GCA-GCGG----GUG- -5'
12843 3' -53.5 NC_003387.1 + 44023 0.69 0.614635
Target:  5'- -gCGGCUCGUCGAcGUCgGUCGgCaGCg -3'
miRNA:   3'- aaGUCGAGCAGCUuUAG-CAGCgGgUG- -5'
12843 3' -53.5 NC_003387.1 + 5467 0.69 0.614635
Target:  5'- gUCAGCUCGggcagaUCGuucaaGUCGCCCGg -3'
miRNA:   3'- aAGUCGAGC------AGCuuuagCAGCGGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.