miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12852 5' -56.1 NC_003387.1 + 11681 0.85 0.043974
Target:  5'- cGGGCugauuaucgccGCGGUCGUCGGGCUCGcuGUCGCg -3'
miRNA:   3'- aCCCG-----------CGCCAGCAGCUUGAGC--UAGUG- -5'
12852 5' -56.1 NC_003387.1 + 12303 0.66 0.670164
Target:  5'- cGGGC-CGGUucgcCGUCGccGACguaGGUCACg -3'
miRNA:   3'- aCCCGcGCCA----GCAGC--UUGag-CUAGUG- -5'
12852 5' -56.1 NC_003387.1 + 12424 0.7 0.458081
Target:  5'- gGcGGCGCuugccGUCGUCGucCUCGAUCGa -3'
miRNA:   3'- aC-CCGCGc----CAGCAGCuuGAGCUAGUg -5'
12852 5' -56.1 NC_003387.1 + 13770 0.73 0.287081
Target:  5'- gGGGC-CGGUCGguaUGGACcCGGUCGCg -3'
miRNA:   3'- aCCCGcGCCAGCa--GCUUGaGCUAGUG- -5'
12852 5' -56.1 NC_003387.1 + 14183 0.66 0.681002
Target:  5'- cGGGCGUGagggcGUCGUgauggcgcgCGAGCUUGAggGCg -3'
miRNA:   3'- aCCCGCGC-----CAGCA---------GCUUGAGCUagUG- -5'
12852 5' -56.1 NC_003387.1 + 14322 0.7 0.429047
Target:  5'- cGGG-GUGGUUGUCGAGgUCGAggUCGu -3'
miRNA:   3'- aCCCgCGCCAGCAGCUUgAGCU--AGUg -5'
12852 5' -56.1 NC_003387.1 + 15421 0.67 0.637479
Target:  5'- -cGGCGCGGUCGaCGAccGCgccgaCGAgCGCg -3'
miRNA:   3'- acCCGCGCCAGCaGCU--UGa----GCUaGUG- -5'
12852 5' -56.1 NC_003387.1 + 15633 0.66 0.681003
Target:  5'- aGGGCGCGcaCGgCGAGgUCGAcCAUg -3'
miRNA:   3'- aCCCGCGCcaGCaGCUUgAGCUaGUG- -5'
12852 5' -56.1 NC_003387.1 + 16322 0.66 0.648392
Target:  5'- -cGGCGcCGGU-GUCGAugUUGAcCGCg -3'
miRNA:   3'- acCCGC-GCCAgCAGCUugAGCUaGUG- -5'
12852 5' -56.1 NC_003387.1 + 16993 0.7 0.438606
Target:  5'- cGGGCGauuUCGUCcAGCUCGGUCAg -3'
miRNA:   3'- aCCCGCgccAGCAGcUUGAGCUAGUg -5'
12852 5' -56.1 NC_003387.1 + 18721 0.79 0.112859
Target:  5'- aGGGCGCGGcacUCGUCGAGCagCGGgcagCGCa -3'
miRNA:   3'- aCCCGCGCC---AGCAGCUUGa-GCUa---GUG- -5'
12852 5' -56.1 NC_003387.1 + 19145 0.69 0.498355
Target:  5'- cGGGCgGUGGcUCGUCGAcGCugUCGAgggCGCg -3'
miRNA:   3'- aCCCG-CGCC-AGCAGCU-UG--AGCUa--GUG- -5'
12852 5' -56.1 NC_003387.1 + 19207 0.69 0.498355
Target:  5'- gUGcGGCaccuuGCuGG-CGUUGAACUUGAUCACg -3'
miRNA:   3'- -AC-CCG-----CG-CCaGCAGCUUGAGCUAGUG- -5'
12852 5' -56.1 NC_003387.1 + 19630 0.68 0.540133
Target:  5'- aGGGCGCGa-CGggCG-GCUCGAUCAg -3'
miRNA:   3'- aCCCGCGCcaGCa-GCuUGAGCUAGUg -5'
12852 5' -56.1 NC_003387.1 + 20177 0.67 0.637479
Target:  5'- aGGGCGCGGUUGaugCGcuGCUgCGccUCGCa -3'
miRNA:   3'- aCCCGCGCCAGCa--GCu-UGA-GCu-AGUG- -5'
12852 5' -56.1 NC_003387.1 + 22673 0.68 0.529568
Target:  5'- aGGGCGCGcUCGUgggCGGugUCGAcgGCg -3'
miRNA:   3'- aCCCGCGCcAGCA---GCUugAGCUagUG- -5'
12852 5' -56.1 NC_003387.1 + 24155 0.68 0.519078
Target:  5'- aGGGCGUcGUCGacggCGAucgccgcCUCGGUCGCc -3'
miRNA:   3'- aCCCGCGcCAGCa---GCUu------GAGCUAGUG- -5'
12852 5' -56.1 NC_003387.1 + 24881 0.7 0.429047
Target:  5'- gUGGcGcCGCGGcUGUCGAACUCGAcCGa -3'
miRNA:   3'- -ACC-C-GCGCCaGCAGCUUGAGCUaGUg -5'
12852 5' -56.1 NC_003387.1 + 26718 0.72 0.340666
Target:  5'- cGuGCGCGG-CG-CGAGCUgGAUCGCg -3'
miRNA:   3'- aCcCGCGCCaGCaGCUUGAgCUAGUG- -5'
12852 5' -56.1 NC_003387.1 + 27929 0.66 0.681003
Target:  5'- gUGGGCGCc-UCGggggGGGCUCGGUCGg -3'
miRNA:   3'- -ACCCGCGccAGCag--CUUGAGCUAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.