miRNA display CGI


Results 1 - 20 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12852 5' -56.1 NC_003387.1 + 124 0.68 0.540134
Target:  5'- aGGGCGUGuUUGcUGAGCUCGcUCGCc -3'
miRNA:   3'- aCCCGCGCcAGCaGCUUGAGCuAGUG- -5'
12852 5' -56.1 NC_003387.1 + 1219 0.66 0.65929
Target:  5'- gGGGCaUGGcUCGUCGAGCUgcuccugccCGGUCugGCg -3'
miRNA:   3'- aCCCGcGCC-AGCAGCUUGA---------GCUAG--UG- -5'
12852 5' -56.1 NC_003387.1 + 1445 0.68 0.572225
Target:  5'- aGGGCucGgGGUCGUCGucCUCG-UCGa -3'
miRNA:   3'- aCCCG--CgCCAGCAGCuuGAGCuAGUg -5'
12852 5' -56.1 NC_003387.1 + 2516 0.66 0.670164
Target:  5'- aGGugacGCGCgGGUCGUCGuuGCcguccCGGUCGCg -3'
miRNA:   3'- aCC----CGCG-CCAGCAGCu-UGa----GCUAGUG- -5'
12852 5' -56.1 NC_003387.1 + 2923 0.66 0.691795
Target:  5'- cGGGCGaGGcucUCGUCGAACUgCGccaGCa -3'
miRNA:   3'- aCCCGCgCC---AGCAGCUUGA-GCuagUG- -5'
12852 5' -56.1 NC_003387.1 + 3354 0.72 0.324647
Target:  5'- -uGGCGCGGUCGUCG-ACggcAUCACc -3'
miRNA:   3'- acCCGCGCCAGCAGCuUGagcUAGUG- -5'
12852 5' -56.1 NC_003387.1 + 3618 0.68 0.529568
Target:  5'- cGGGUGCGcGUCGagGuGCUCGAcuUCGu -3'
miRNA:   3'- aCCCGCGC-CAGCagCuUGAGCU--AGUg -5'
12852 5' -56.1 NC_003387.1 + 4040 0.73 0.301683
Target:  5'- aGGGCguGCGGUgGgugCGAuacgcCUCGGUCACg -3'
miRNA:   3'- aCCCG--CGCCAgCa--GCUu----GAGCUAGUG- -5'
12852 5' -56.1 NC_003387.1 + 5927 0.68 0.529568
Target:  5'- --aGCGCGGgcCGUCGAACaccuucUCGAUCAg -3'
miRNA:   3'- accCGCGCCa-GCAGCUUG------AGCUAGUg -5'
12852 5' -56.1 NC_003387.1 + 6089 0.68 0.572225
Target:  5'- cGGG-GC-GUCGUCGGcagGCUCGAaCACc -3'
miRNA:   3'- aCCCgCGcCAGCAGCU---UGAGCUaGUG- -5'
12852 5' -56.1 NC_003387.1 + 6141 0.67 0.615648
Target:  5'- aGGGCGCcacugugagGGUCGgCGuAGC-CGAUCAg -3'
miRNA:   3'- aCCCGCG---------CCAGCaGC-UUGaGCUAGUg -5'
12852 5' -56.1 NC_003387.1 + 6780 0.66 0.658201
Target:  5'- --uGCGCGGgcCGUCGGcgaacacGCUCGggCACg -3'
miRNA:   3'- accCGCGCCa-GCAGCU-------UGAGCuaGUG- -5'
12852 5' -56.1 NC_003387.1 + 6831 0.69 0.478009
Target:  5'- cGGGCGgcaGGUCGaUCGcccGCUCGGcCGCg -3'
miRNA:   3'- aCCCGCg--CCAGC-AGCu--UGAGCUaGUG- -5'
12852 5' -56.1 NC_003387.1 + 9031 0.66 0.681003
Target:  5'- cGGGCGCcGUCGgCGAuccACgccagGAUCGCg -3'
miRNA:   3'- aCCCGCGcCAGCaGCU---UGag---CUAGUG- -5'
12852 5' -56.1 NC_003387.1 + 10051 0.71 0.383167
Target:  5'- aGGGCGCGGU-GUCG-GC-CGGuaUCACg -3'
miRNA:   3'- aCCCGCGCCAgCAGCuUGaGCU--AGUG- -5'
12852 5' -56.1 NC_003387.1 + 10510 0.72 0.332586
Target:  5'- cGGuGCGcCGGUCGcCGuccuGCUCGcgCACg -3'
miRNA:   3'- aCC-CGC-GCCAGCaGCu---UGAGCuaGUG- -5'
12852 5' -56.1 NC_003387.1 + 10940 0.66 0.65929
Target:  5'- aGGGCGCGGUCGacUCugaGACUuuccgccgggUGAUCGg -3'
miRNA:   3'- aCCCGCGCCAGC--AGc--UUGA----------GCUAGUg -5'
12852 5' -56.1 NC_003387.1 + 11002 0.66 0.65929
Target:  5'- aGGGUauggGCGGcaguuUCGUUG-GCUCGAUgGCg -3'
miRNA:   3'- aCCCG----CGCC-----AGCAGCuUGAGCUAgUG- -5'
12852 5' -56.1 NC_003387.1 + 11104 1.1 0.000705
Target:  5'- uUGGGCGCGGUCGUCGAACUCGAUCACg -3'
miRNA:   3'- -ACCCGCGCCAGCAGCUUGAGCUAGUG- -5'
12852 5' -56.1 NC_003387.1 + 11423 0.66 0.65929
Target:  5'- cGaGGUGCuGUCGUCGGuGCUCGugccCGCg -3'
miRNA:   3'- aC-CCGCGcCAGCAGCU-UGAGCua--GUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.