miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12852 5' -56.1 NC_003387.1 + 11681 0.85 0.043974
Target:  5'- cGGGCugauuaucgccGCGGUCGUCGGGCUCGcuGUCGCg -3'
miRNA:   3'- aCCCG-----------CGCCAGCAGCUUGAGC--UAGUG- -5'
12852 5' -56.1 NC_003387.1 + 50898 0.68 0.572225
Target:  5'- gGGGCGUcGaCGUCGAggGCaUGGUCACg -3'
miRNA:   3'- aCCCGCGcCaGCAGCU--UGaGCUAGUG- -5'
12852 5' -56.1 NC_003387.1 + 19145 0.69 0.498355
Target:  5'- cGGGCgGUGGcUCGUCGAcGCugUCGAgggCGCg -3'
miRNA:   3'- aCCCG-CGCC-AGCAGCU-UG--AGCUa--GUG- -5'
12852 5' -56.1 NC_003387.1 + 45144 0.69 0.478009
Target:  5'- cGaGGCGCGG-CGcUCGGAggUGGUCGCg -3'
miRNA:   3'- aC-CCGCGCCaGC-AGCUUgaGCUAGUG- -5'
12852 5' -56.1 NC_003387.1 + 10051 0.71 0.383167
Target:  5'- aGGGCGCGGU-GUCG-GC-CGGuaUCACg -3'
miRNA:   3'- aCCCGCGCCAgCAGCuUGaGCU--AGUG- -5'
12852 5' -56.1 NC_003387.1 + 26718 0.72 0.340666
Target:  5'- cGuGCGCGG-CG-CGAGCUgGAUCGCg -3'
miRNA:   3'- aCcCGCGCCaGCaGCUUGAgCUAGUG- -5'
12852 5' -56.1 NC_003387.1 + 46136 0.66 0.681002
Target:  5'- cGGGCgugaggugccGCGGUCGUCGuucuauGugUUGGUgCGCc -3'
miRNA:   3'- aCCCG----------CGCCAGCAGC------UugAGCUA-GUG- -5'
12852 5' -56.1 NC_003387.1 + 11423 0.66 0.65929
Target:  5'- cGaGGUGCuGUCGUCGGuGCUCGugccCGCg -3'
miRNA:   3'- aC-CCGCGcCAGCAGCU-UGAGCua--GUG- -5'
12852 5' -56.1 NC_003387.1 + 32734 0.66 0.652753
Target:  5'- -cGGCGCGGUgGccUCGGcgauucgggcugucaACUCGAUgCGCa -3'
miRNA:   3'- acCCGCGCCAgC--AGCU---------------UGAGCUA-GUG- -5'
12852 5' -56.1 NC_003387.1 + 19630 0.68 0.540133
Target:  5'- aGGGCGCGa-CGggCG-GCUCGAUCAg -3'
miRNA:   3'- aCCCGCGCcaGCa-GCuUGAGCUAGUg -5'
12852 5' -56.1 NC_003387.1 + 37303 0.7 0.410305
Target:  5'- -cGGCGCGGUCGUCGAccgcGC-CGAcgUGCc -3'
miRNA:   3'- acCCGCGCCAGCAGCU----UGaGCUa-GUG- -5'
12852 5' -56.1 NC_003387.1 + 13770 0.73 0.287081
Target:  5'- gGGGC-CGGUCGguaUGGACcCGGUCGCg -3'
miRNA:   3'- aCCCGcGCCAGCa--GCUUGaGCUAGUG- -5'
12852 5' -56.1 NC_003387.1 + 10940 0.66 0.65929
Target:  5'- aGGGCGCGGUCGacUCugaGACUuuccgccgggUGAUCGg -3'
miRNA:   3'- aCCCGCGCCAGC--AGc--UUGA----------GCUAGUg -5'
12852 5' -56.1 NC_003387.1 + 4040 0.73 0.301683
Target:  5'- aGGGCguGCGGUgGgugCGAuacgcCUCGGUCACg -3'
miRNA:   3'- aCCCG--CGCCAgCa--GCUu----GAGCUAGUG- -5'
12852 5' -56.1 NC_003387.1 + 39247 0.68 0.529567
Target:  5'- cGGGCGaGGcCGUCGAGUUCGAccUCGg -3'
miRNA:   3'- aCCCGCgCCaGCAGCUUGAGCU--AGUg -5'
12852 5' -56.1 NC_003387.1 + 11002 0.66 0.65929
Target:  5'- aGGGUauggGCGGcaguuUCGUUG-GCUCGAUgGCg -3'
miRNA:   3'- aCCCG----CGCC-----AGCAGCuUGAGCUAgUG- -5'
12852 5' -56.1 NC_003387.1 + 14183 0.66 0.681002
Target:  5'- cGGGCGUGagggcGUCGUgauggcgcgCGAGCUUGAggGCg -3'
miRNA:   3'- aCCCGCGC-----CAGCA---------GCUUGAGCUagUG- -5'
12852 5' -56.1 NC_003387.1 + 3354 0.72 0.324647
Target:  5'- -uGGCGCGGUCGUCG-ACggcAUCACc -3'
miRNA:   3'- acCCGCGCCAGCAGCuUGagcUAGUG- -5'
12852 5' -56.1 NC_003387.1 + 45230 0.67 0.637478
Target:  5'- cGuGGCGUGGUCGgagUCGAuggGCUgGA-CGCg -3'
miRNA:   3'- aC-CCGCGCCAGC---AGCU---UGAgCUaGUG- -5'
12852 5' -56.1 NC_003387.1 + 35162 0.67 0.636387
Target:  5'- gGGGCGuuGUCGcccuugucacccuUCGGGC-CGAUCAg -3'
miRNA:   3'- aCCCGCgcCAGC-------------AGCUUGaGCUAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.