miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12852 5' -56.1 NC_003387.1 + 11104 1.1 0.000705
Target:  5'- uUGGGCGCGGUCGUCGAACUCGAUCACg -3'
miRNA:   3'- -ACCCGCGCCAGCAGCUUGAGCUAGUG- -5'
12852 5' -56.1 NC_003387.1 + 11681 0.85 0.043974
Target:  5'- cGGGCugauuaucgccGCGGUCGUCGGGCUCGcuGUCGCg -3'
miRNA:   3'- aCCCG-----------CGCCAGCAGCUUGAGC--UAGUG- -5'
12852 5' -56.1 NC_003387.1 + 18721 0.79 0.112859
Target:  5'- aGGGCGCGGcacUCGUCGAGCagCGGgcagCGCa -3'
miRNA:   3'- aCCCGCGCC---AGCAGCUUGa-GCUa---GUG- -5'
12852 5' -56.1 NC_003387.1 + 35650 0.79 0.12615
Target:  5'- gGGGCGuuGaCGUCGAcccACUCGAUCGCg -3'
miRNA:   3'- aCCCGCgcCaGCAGCU---UGAGCUAGUG- -5'
12852 5' -56.1 NC_003387.1 + 37537 0.75 0.234227
Target:  5'- cGGGCGCGGgccuccUCGUCGAucacCUCGcggCGCg -3'
miRNA:   3'- aCCCGCGCC------AGCAGCUu---GAGCua-GUG- -5'
12852 5' -56.1 NC_003387.1 + 36035 0.73 0.273042
Target:  5'- uUGGGCGUGuucUCGUCGuaaugcAGCUUGAUCGCc -3'
miRNA:   3'- -ACCCGCGCc--AGCAGC------UUGAGCUAGUG- -5'
12852 5' -56.1 NC_003387.1 + 13770 0.73 0.287081
Target:  5'- gGGGC-CGGUCGguaUGGACcCGGUCGCg -3'
miRNA:   3'- aCCCGcGCCAGCa--GCUUGaGCUAGUG- -5'
12852 5' -56.1 NC_003387.1 + 4040 0.73 0.301683
Target:  5'- aGGGCguGCGGUgGgugCGAuacgcCUCGGUCACg -3'
miRNA:   3'- aCCCG--CGCCAgCa--GCUu----GAGCUAGUG- -5'
12852 5' -56.1 NC_003387.1 + 3354 0.72 0.324647
Target:  5'- -uGGCGCGGUCGUCG-ACggcAUCACc -3'
miRNA:   3'- acCCGCGCCAGCAGCuUGagcUAGUG- -5'
12852 5' -56.1 NC_003387.1 + 10510 0.72 0.332586
Target:  5'- cGGuGCGcCGGUCGcCGuccuGCUCGcgCACg -3'
miRNA:   3'- aCC-CGC-GCCAGCaGCu---UGAGCuaGUG- -5'
12852 5' -56.1 NC_003387.1 + 26718 0.72 0.340666
Target:  5'- cGuGCGCGG-CG-CGAGCUgGAUCGCg -3'
miRNA:   3'- aCcCGCGCCaGCaGCUUGAgCUAGUG- -5'
12852 5' -56.1 NC_003387.1 + 35456 0.72 0.357249
Target:  5'- cGGG-GUcGUCGUCGAACUgGAUCGa -3'
miRNA:   3'- aCCCgCGcCAGCAGCUUGAgCUAGUg -5'
12852 5' -56.1 NC_003387.1 + 10051 0.71 0.383167
Target:  5'- aGGGCGCGGU-GUCG-GC-CGGuaUCACg -3'
miRNA:   3'- aCCCGCGCCAgCAGCuUGaGCU--AGUG- -5'
12852 5' -56.1 NC_003387.1 + 52401 0.7 0.410305
Target:  5'- uUGGcGUGCGuGUCGcCGGGCUCGGgcucCACc -3'
miRNA:   3'- -ACC-CGCGC-CAGCaGCUUGAGCUa---GUG- -5'
12852 5' -56.1 NC_003387.1 + 37303 0.7 0.410305
Target:  5'- -cGGCGCGGUCGUCGAccgcGC-CGAcgUGCc -3'
miRNA:   3'- acCCGCGCCAGCAGCU----UGaGCUa-GUG- -5'
12852 5' -56.1 NC_003387.1 + 14322 0.7 0.429047
Target:  5'- cGGG-GUGGUUGUCGAGgUCGAggUCGu -3'
miRNA:   3'- aCCCgCGCCAGCAGCUUgAGCU--AGUg -5'
12852 5' -56.1 NC_003387.1 + 24881 0.7 0.429047
Target:  5'- gUGGcGcCGCGGcUGUCGAACUCGAcCGa -3'
miRNA:   3'- -ACC-C-GCGCCaGCAGCUUGAGCUaGUg -5'
12852 5' -56.1 NC_003387.1 + 16993 0.7 0.438606
Target:  5'- cGGGCGauuUCGUCcAGCUCGGUCAg -3'
miRNA:   3'- aCCCGCgccAGCAGcUUGAGCUAGUg -5'
12852 5' -56.1 NC_003387.1 + 12424 0.7 0.458081
Target:  5'- gGcGGCGCuugccGUCGUCGucCUCGAUCGa -3'
miRNA:   3'- aC-CCGCGc----CAGCAGCuuGAGCUAGUg -5'
12852 5' -56.1 NC_003387.1 + 6831 0.69 0.478009
Target:  5'- cGGGCGgcaGGUCGaUCGcccGCUCGGcCGCg -3'
miRNA:   3'- aCCCGCg--CCAGC-AGCu--UGAGCUaGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.