miRNA display CGI


Results 21 - 40 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12852 5' -56.1 NC_003387.1 + 6831 0.69 0.478009
Target:  5'- cGGGCGgcaGGUCGaUCGcccGCUCGGcCGCg -3'
miRNA:   3'- aCCCGCg--CCAGC-AGCu--UGAGCUaGUG- -5'
12852 5' -56.1 NC_003387.1 + 12424 0.7 0.458081
Target:  5'- gGcGGCGCuugccGUCGUCGucCUCGAUCGa -3'
miRNA:   3'- aC-CCGCGc----CAGCAGCuuGAGCUAGUg -5'
12852 5' -56.1 NC_003387.1 + 16993 0.7 0.438606
Target:  5'- cGGGCGauuUCGUCcAGCUCGGUCAg -3'
miRNA:   3'- aCCCGCgccAGCAGcUUGAGCUAGUg -5'
12852 5' -56.1 NC_003387.1 + 12303 0.66 0.670164
Target:  5'- cGGGC-CGGUucgcCGUCGccGACguaGGUCACg -3'
miRNA:   3'- aCCCGcGCCA----GCAGC--UUGag-CUAGUG- -5'
12852 5' -56.1 NC_003387.1 + 24881 0.7 0.429047
Target:  5'- gUGGcGcCGCGGcUGUCGAACUCGAcCGa -3'
miRNA:   3'- -ACC-C-GCGCCaGCAGCUUGAGCUaGUg -5'
12852 5' -56.1 NC_003387.1 + 19207 0.69 0.498355
Target:  5'- gUGcGGCaccuuGCuGG-CGUUGAACUUGAUCACg -3'
miRNA:   3'- -AC-CCG-----CG-CCaGCAGCUUGAGCUAGUG- -5'
12852 5' -56.1 NC_003387.1 + 24155 0.68 0.519078
Target:  5'- aGGGCGUcGUCGacggCGAucgccgcCUCGGUCGCc -3'
miRNA:   3'- aCCCGCGcCAGCa---GCUu------GAGCUAGUG- -5'
12852 5' -56.1 NC_003387.1 + 2516 0.66 0.670164
Target:  5'- aGGugacGCGCgGGUCGUCGuuGCcguccCGGUCGCg -3'
miRNA:   3'- aCC----CGCG-CCAGCAGCu-UGa----GCUAGUG- -5'
12852 5' -56.1 NC_003387.1 + 33990 0.66 0.65929
Target:  5'- cGGGuCGCGGUCGacgaCGAGCUgccUGcuGUCAUa -3'
miRNA:   3'- aCCC-GCGCCAGCa---GCUUGA---GC--UAGUG- -5'
12852 5' -56.1 NC_003387.1 + 6780 0.66 0.658201
Target:  5'- --uGCGCGGgcCGUCGGcgaacacGCUCGggCACg -3'
miRNA:   3'- accCGCGCCa-GCAGCU-------UGAGCuaGUG- -5'
12852 5' -56.1 NC_003387.1 + 16322 0.66 0.648392
Target:  5'- -cGGCGcCGGU-GUCGAugUUGAcCGCg -3'
miRNA:   3'- acCCGC-GCCAgCAGCUugAGCUaGUG- -5'
12852 5' -56.1 NC_003387.1 + 15421 0.67 0.637479
Target:  5'- -cGGCGCGGUCGaCGAccGCgccgaCGAgCGCg -3'
miRNA:   3'- acCCGCGCCAGCaGCU--UGa----GCUaGUG- -5'
12852 5' -56.1 NC_003387.1 + 20177 0.67 0.637479
Target:  5'- aGGGCGCGGUUGaugCGcuGCUgCGccUCGCa -3'
miRNA:   3'- aCCCGCGCCAGCa--GCu-UGA-GCu-AGUG- -5'
12852 5' -56.1 NC_003387.1 + 35162 0.67 0.636387
Target:  5'- gGGGCGuuGUCGcccuugucacccuUCGGGC-CGAUCAg -3'
miRNA:   3'- aCCCGCgcCAGC-------------AGCUUGaGCUAGUg -5'
12852 5' -56.1 NC_003387.1 + 1445 0.68 0.572225
Target:  5'- aGGGCucGgGGUCGUCGucCUCG-UCGa -3'
miRNA:   3'- aCCCG--CgCCAGCAGCuuGAGCuAGUg -5'
12852 5' -56.1 NC_003387.1 + 45242 0.68 0.55077
Target:  5'- cGGGUGCGGgugCG-CGG-CUCGGugaUCGCc -3'
miRNA:   3'- aCCCGCGCCa--GCaGCUuGAGCU---AGUG- -5'
12852 5' -56.1 NC_003387.1 + 124 0.68 0.540134
Target:  5'- aGGGCGUGuUUGcUGAGCUCGcUCGCc -3'
miRNA:   3'- aCCCGCGCcAGCaGCUUGAGCuAGUG- -5'
12852 5' -56.1 NC_003387.1 + 3618 0.68 0.529568
Target:  5'- cGGGUGCGcGUCGagGuGCUCGAcuUCGu -3'
miRNA:   3'- aCCCGCGC-CAGCagCuUGAGCU--AGUg -5'
12852 5' -56.1 NC_003387.1 + 22673 0.68 0.529568
Target:  5'- aGGGCGCGcUCGUgggCGGugUCGAcgGCg -3'
miRNA:   3'- aCCCGCGCcAGCA---GCUugAGCUagUG- -5'
12852 5' -56.1 NC_003387.1 + 5927 0.68 0.529568
Target:  5'- --aGCGCGGgcCGUCGAACaccuucUCGAUCAg -3'
miRNA:   3'- accCGCGCCa-GCAGCUUG------AGCUAGUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.