Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12853 | 3' | -56.3 | NC_003387.1 | + | 3110 | 0.72 | 0.284093 |
Target: 5'- --aGCACGUGGCGAuggucgcgcagaucaGC-CCGGCUCAg -3' miRNA: 3'- aagUGUGCACUGCU---------------CGuGGCCGAGUg -5' |
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12853 | 3' | -56.3 | NC_003387.1 | + | 3756 | 0.66 | 0.602116 |
Target: 5'- -gCcCGCGUGcACGAuCGCCaGCUCACg -3' miRNA: 3'- aaGuGUGCAC-UGCUcGUGGcCGAGUG- -5' |
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12853 | 3' | -56.3 | NC_003387.1 | + | 4069 | 0.67 | 0.558141 |
Target: 5'- gUCACgGCGUG-CGGGUucuGCCGcauGCUCGCg -3' miRNA: 3'- aAGUG-UGCACuGCUCG---UGGC---CGAGUG- -5' |
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12853 | 3' | -56.3 | NC_003387.1 | + | 5502 | 0.72 | 0.281216 |
Target: 5'- cUUgACAagGUGAuCGAGCAgCGGCUCGCc -3' miRNA: 3'- -AAgUGUg-CACU-GCUCGUgGCCGAGUG- -5' |
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12853 | 3' | -56.3 | NC_003387.1 | + | 8027 | 0.67 | 0.566876 |
Target: 5'- gUCACcgacgcgGCGaucgagaacucuuUGGCGAGCACCGGCa--- -3' miRNA: 3'- aAGUG-------UGC-------------ACUGCUCGUGGCCGagug -5' |
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12853 | 3' | -56.3 | NC_003387.1 | + | 8258 | 0.69 | 0.433652 |
Target: 5'- gUCACGCG-GGCGuGCAgCGcCUCGCg -3' miRNA: 3'- aAGUGUGCaCUGCuCGUgGCcGAGUG- -5' |
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12853 | 3' | -56.3 | NC_003387.1 | + | 8294 | 0.68 | 0.463367 |
Target: 5'- --gGCgACGUGugGAuCACCGGCgcggCGCa -3' miRNA: 3'- aagUG-UGCACugCUcGUGGCCGa---GUG- -5' |
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12853 | 3' | -56.3 | NC_003387.1 | + | 8502 | 0.69 | 0.423036 |
Target: 5'- -cCACACcaggcaaGUGucccuCGGGCcgACCGGCUCGCg -3' miRNA: 3'- aaGUGUG-------CACu----GCUCG--UGGCCGAGUG- -5' |
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12853 | 3' | -56.3 | NC_003387.1 | + | 9022 | 0.66 | 0.624296 |
Target: 5'- --aGCACcUGGCGGGCGCCgucGGCgaucCACg -3' miRNA: 3'- aagUGUGcACUGCUCGUGG---CCGa---GUG- -5' |
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12853 | 3' | -56.3 | NC_003387.1 | + | 9055 | 0.66 | 0.624296 |
Target: 5'- aUCGCGCagaaGGCGGGC-CUGGCUgACc -3' miRNA: 3'- aAGUGUGca--CUGCUCGuGGCCGAgUG- -5' |
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12853 | 3' | -56.3 | NC_003387.1 | + | 10240 | 0.67 | 0.535406 |
Target: 5'- --gACGCGaUGAgccgcgcCGAGCGCgGGCUCAa -3' miRNA: 3'- aagUGUGC-ACU-------GCUCGUGgCCGAGUg -5' |
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12853 | 3' | -56.3 | NC_003387.1 | + | 10600 | 1.06 | 0.001034 |
Target: 5'- gUUCACACGUGACGAGCACCGGCUCACc -3' miRNA: 3'- -AAGUGUGCACUGCUCGUGGCCGAGUG- -5' |
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12853 | 3' | -56.3 | NC_003387.1 | + | 14653 | 0.68 | 0.494115 |
Target: 5'- -gCGCACaGUGACGcGGCGCUcGCUCAg -3' miRNA: 3'- aaGUGUG-CACUGC-UCGUGGcCGAGUg -5' |
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12853 | 3' | -56.3 | NC_003387.1 | + | 14912 | 0.66 | 0.623186 |
Target: 5'- -gCACgACGUGACGgcugcgcGGCuACCGGCgcagcggCGCa -3' miRNA: 3'- aaGUG-UGCACUGC-------UCG-UGGCCGa------GUG- -5' |
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12853 | 3' | -56.3 | NC_003387.1 | + | 20203 | 0.66 | 0.580041 |
Target: 5'- cUCGCACGgccgGGCGuGCACgcagCGGCagucgUCGCa -3' miRNA: 3'- aAGUGUGCa---CUGCuCGUG----GCCG-----AGUG- -5' |
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12853 | 3' | -56.3 | NC_003387.1 | + | 21840 | 0.7 | 0.395814 |
Target: 5'- -gCGCAgCGUGugGA-CACCGGCgCACc -3' miRNA: 3'- aaGUGU-GCACugCUcGUGGCCGaGUG- -5' |
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12853 | 3' | -56.3 | NC_003387.1 | + | 23099 | 0.66 | 0.613198 |
Target: 5'- gUCGCGCGUG-CGGuGCACCGaCUgAUa -3' miRNA: 3'- aAGUGUGCACuGCU-CGUGGCcGAgUG- -5' |
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12853 | 3' | -56.3 | NC_003387.1 | + | 28200 | 0.66 | 0.624296 |
Target: 5'- cUCGCcaAgGUGGCGgaacgGGCugCGGCUgACg -3' miRNA: 3'- aAGUG--UgCACUGC-----UCGugGCCGAgUG- -5' |
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12853 | 3' | -56.3 | NC_003387.1 | + | 28773 | 0.7 | 0.359312 |
Target: 5'- -gCGCACGUGcugcagcAUGGGCACUGGCaCACc -3' miRNA: 3'- aaGUGUGCAC-------UGCUCGUGGCCGaGUG- -5' |
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12853 | 3' | -56.3 | NC_003387.1 | + | 30766 | 0.66 | 0.635402 |
Target: 5'- gUCGgGCGUGAcCGuGUACU-GCUCGCg -3' miRNA: 3'- aAGUgUGCACU-GCuCGUGGcCGAGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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