Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12853 | 3' | -56.3 | NC_003387.1 | + | 8502 | 0.69 | 0.423036 |
Target: 5'- -cCACACcaggcaaGUGucccuCGGGCcgACCGGCUCGCg -3' miRNA: 3'- aaGUGUG-------CACu----GCUCG--UGGCCGAGUG- -5' |
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12853 | 3' | -56.3 | NC_003387.1 | + | 42200 | 0.66 | 0.624296 |
Target: 5'- -gCGgGCGUGcGCGAGCaggacggcgACCGGCgCACc -3' miRNA: 3'- aaGUgUGCAC-UGCUCG---------UGGCCGaGUG- -5' |
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12853 | 3' | -56.3 | NC_003387.1 | + | 30766 | 0.66 | 0.635402 |
Target: 5'- gUCGgGCGUGAcCGuGUACU-GCUCGCg -3' miRNA: 3'- aAGUgUGCACU-GCuCGUGGcCGAGUG- -5' |
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12853 | 3' | -56.3 | NC_003387.1 | + | 41552 | 0.66 | 0.635402 |
Target: 5'- -cUACAUGgagGGCGAGCACCugucGCUCu- -3' miRNA: 3'- aaGUGUGCa--CUGCUCGUGGc---CGAGug -5' |
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12853 | 3' | -56.3 | NC_003387.1 | + | 44476 | 0.74 | 0.228445 |
Target: 5'- -aCGCccGCGUGACGGGUGaccguaaCGGCUCACg -3' miRNA: 3'- aaGUG--UGCACUGCUCGUg------GCCGAGUG- -5' |
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12853 | 3' | -56.3 | NC_003387.1 | + | 42080 | 0.73 | 0.240799 |
Target: 5'- -gCGCGCGUGcuGCGGGUGCCcGGCUCGu -3' miRNA: 3'- aaGUGUGCAC--UGCUCGUGG-CCGAGUg -5' |
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12853 | 3' | -56.3 | NC_003387.1 | + | 5502 | 0.72 | 0.281216 |
Target: 5'- cUUgACAagGUGAuCGAGCAgCGGCUCGCc -3' miRNA: 3'- -AAgUGUg-CACU-GCUCGUgGCCGAGUG- -5' |
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12853 | 3' | -56.3 | NC_003387.1 | + | 3110 | 0.72 | 0.284093 |
Target: 5'- --aGCACGUGGCGAuggucgcgcagaucaGC-CCGGCUCAg -3' miRNA: 3'- aagUGUGCACUGCU---------------CGuGGCCGAGUg -5' |
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12853 | 3' | -56.3 | NC_003387.1 | + | 43086 | 0.72 | 0.288453 |
Target: 5'- -gCACACcaggGUGACGGGCGCCGGgUacgaGCg -3' miRNA: 3'- aaGUGUG----CACUGCUCGUGGCCgAg---UG- -5' |
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12853 | 3' | -56.3 | NC_003387.1 | + | 37264 | 0.66 | 0.624296 |
Target: 5'- gUCGgccCGCGUGGCGgucaaGGCGCCuGGCgCGCu -3' miRNA: 3'- aAGU---GUGCACUGC-----UCGUGG-CCGaGUG- -5' |
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12853 | 3' | -56.3 | NC_003387.1 | + | 39654 | 0.66 | 0.602116 |
Target: 5'- gUCGCGCaUGGCguggGAGCAgCaGCUCGCg -3' miRNA: 3'- aAGUGUGcACUG----CUCGUgGcCGAGUG- -5' |
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12853 | 3' | -56.3 | NC_003387.1 | + | 4069 | 0.67 | 0.558141 |
Target: 5'- gUCACgGCGUG-CGGGUucuGCCGcauGCUCGCg -3' miRNA: 3'- aAGUG-UGCACuGCUCG---UGGC---CGAGUG- -5' |
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12853 | 3' | -56.3 | NC_003387.1 | + | 32288 | 0.69 | 0.443435 |
Target: 5'- --gGgGCGcGAgGAGCACCGGCggcugCACa -3' miRNA: 3'- aagUgUGCaCUgCUCGUGGCCGa----GUG- -5' |
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12853 | 3' | -56.3 | NC_003387.1 | + | 14912 | 0.66 | 0.623186 |
Target: 5'- -gCACgACGUGACGgcugcgcGGCuACCGGCgcagcggCGCa -3' miRNA: 3'- aaGUG-UGCACUGC-------UCG-UGGCCGa------GUG- -5' |
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12853 | 3' | -56.3 | NC_003387.1 | + | 8294 | 0.68 | 0.463367 |
Target: 5'- --gGCgACGUGugGAuCACCGGCgcggCGCa -3' miRNA: 3'- aagUG-UGCACugCUcGUGGCCGa---GUG- -5' |
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12853 | 3' | -56.3 | NC_003387.1 | + | 49426 | 0.67 | 0.546195 |
Target: 5'- --gGCGCGUGAacgucgcCGAGCAguacCCGGCacgCACa -3' miRNA: 3'- aagUGUGCACU-------GCUCGU----GGCCGa--GUG- -5' |
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12853 | 3' | -56.3 | NC_003387.1 | + | 46981 | 0.66 | 0.624296 |
Target: 5'- -aCAUGCGggcgacgacGACGAGCGCgGGC-CGCc -3' miRNA: 3'- aaGUGUGCa--------CUGCUCGUGgCCGaGUG- -5' |
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12853 | 3' | -56.3 | NC_003387.1 | + | 9055 | 0.66 | 0.624296 |
Target: 5'- aUCGCGCagaaGGCGGGC-CUGGCUgACc -3' miRNA: 3'- aAGUGUGca--CUGCUCGuGGCCGAgUG- -5' |
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12853 | 3' | -56.3 | NC_003387.1 | + | 32372 | 0.68 | 0.483759 |
Target: 5'- -cCGCACGaGGCGGGgGCUGGCcgaCACa -3' miRNA: 3'- aaGUGUGCaCUGCUCgUGGCCGa--GUG- -5' |
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12853 | 3' | -56.3 | NC_003387.1 | + | 10240 | 0.67 | 0.535406 |
Target: 5'- --gACGCGaUGAgccgcgcCGAGCGCgGGCUCAa -3' miRNA: 3'- aagUGUGC-ACU-------GCUCGUGgCCGAGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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