miRNA display CGI


Results 41 - 60 of 194 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12853 5' -60.9 NC_003387.1 + 19411 0.66 0.396532
Target:  5'- cGUGCGGGCCuugaugccaaGGGC-CuuGCA-CACGUc -3'
miRNA:   3'- -CAUGCUCGG----------CCCGuGggCGUcGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 39767 0.66 0.396532
Target:  5'- gGUACGAGCCGccaGaCGCCgaCGUGGCACuGCc -3'
miRNA:   3'- -CAUGCUCGGCc--C-GUGG--GCGUCGUG-CG- -5'
12853 5' -60.9 NC_003387.1 + 45766 0.66 0.396532
Target:  5'- -gGCGcGCUGuGGCGCCUGCccgccGCuGCGCa -3'
miRNA:   3'- caUGCuCGGC-CCGUGGGCGu----CG-UGCG- -5'
12853 5' -60.9 NC_003387.1 + 43109 0.66 0.387762
Target:  5'- gGUACGAGCgCGacGGCGCggcgCCGCGGUgguggGCGUu -3'
miRNA:   3'- -CAUGCUCG-GC--CCGUG----GGCGUCG-----UGCG- -5'
12853 5' -60.9 NC_003387.1 + 52643 0.66 0.387762
Target:  5'- aGU-CGAGCCaGcaaaCGCCCGCGGCgccgaucgaGCGCg -3'
miRNA:   3'- -CAuGCUCGGcCc---GUGGGCGUCG---------UGCG- -5'
12853 5' -60.9 NC_003387.1 + 3441 0.66 0.387762
Target:  5'- -gGCGAGCaccuGGGCgACCuucaCGCGGUcgauGCGCg -3'
miRNA:   3'- caUGCUCGg---CCCG-UGG----GCGUCG----UGCG- -5'
12853 5' -60.9 NC_003387.1 + 4152 0.66 0.387762
Target:  5'- -gGCGAGgCGGGCgucgauGCaCGCcuGGCACGUg -3'
miRNA:   3'- caUGCUCgGCCCG------UGgGCG--UCGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 33559 0.66 0.387762
Target:  5'- cGUGCGGGCCGcGCcCUCGaCAGCGuCGa -3'
miRNA:   3'- -CAUGCUCGGCcCGuGGGC-GUCGU-GCg -5'
12853 5' -60.9 NC_003387.1 + 19463 0.66 0.387762
Target:  5'- -gGCGgcaGGCCGGGCAggaCGUcgucgAGCACGUa -3'
miRNA:   3'- caUGC---UCGGCCCGUgg-GCG-----UCGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 46280 0.66 0.385155
Target:  5'- -gGCGAcGCCGcccacgaccucgacGGCcugGCCCGCAGuCACcGCg -3'
miRNA:   3'- caUGCU-CGGC--------------CCG---UGGGCGUC-GUG-CG- -5'
12853 5' -60.9 NC_003387.1 + 14875 0.66 0.382561
Target:  5'- -gGCGAGCCgccgggcgcagGGGUgcccgaccucgcucgGCCCGaucGCGCGCu -3'
miRNA:   3'- caUGCUCGG-----------CCCG---------------UGGGCgu-CGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 15520 0.66 0.379119
Target:  5'- uUAUGAGCac--CGCCUGCuGCACGCg -3'
miRNA:   3'- cAUGCUCGgcccGUGGGCGuCGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 24575 0.66 0.379119
Target:  5'- -aGCuGGCCGGGCucgaUCGUGGgGCGCu -3'
miRNA:   3'- caUGcUCGGCCCGug--GGCGUCgUGCG- -5'
12853 5' -60.9 NC_003387.1 + 39273 0.66 0.379119
Target:  5'- -gGCGAGCUGGGCAagCUGCucgacgacGGCAaGCc -3'
miRNA:   3'- caUGCUCGGCCCGUg-GGCG--------UCGUgCG- -5'
12853 5' -60.9 NC_003387.1 + 6782 0.66 0.379119
Target:  5'- -cGCGGGCCGucGGCGaacaCGCucgGGCACGUg -3'
miRNA:   3'- caUGCUCGGC--CCGUgg--GCG---UCGUGCG- -5'
12853 5' -60.9 NC_003387.1 + 30742 0.67 0.370607
Target:  5'- --cCGGGaucaCCGGGCGCaCCGUAGUugaacaGCGCc -3'
miRNA:   3'- cauGCUC----GGCCCGUG-GGCGUCG------UGCG- -5'
12853 5' -60.9 NC_003387.1 + 24781 0.67 0.370607
Target:  5'- -cACGAGCCGGaacCGCUCGgGGU-CGCg -3'
miRNA:   3'- caUGCUCGGCCc--GUGGGCgUCGuGCG- -5'
12853 5' -60.9 NC_003387.1 + 18701 0.67 0.370607
Target:  5'- gGUGCGGGUCGcgcaGCGCCagggCGCGGCACu- -3'
miRNA:   3'- -CAUGCUCGGCc---CGUGG----GCGUCGUGcg -5'
12853 5' -60.9 NC_003387.1 + 18080 0.67 0.370607
Target:  5'- -gGCGAGauaaCGGuGUGCCCGaGGCuGCGCa -3'
miRNA:   3'- caUGCUCg---GCC-CGUGGGCgUCG-UGCG- -5'
12853 5' -60.9 NC_003387.1 + 48340 0.67 0.370607
Target:  5'- -cGCGAGUaucaGGaGCACcuggCCGCcgAGCGCGCc -3'
miRNA:   3'- caUGCUCGg---CC-CGUG----GGCG--UCGUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.