miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12864 3' -65.4 NC_003387.1 + 10863 0.66 0.250986
Target:  5'- uGCCCGCUcaucaCGaCCGCCg--UCGGCCg- -3'
miRNA:   3'- -CGGGCGAc----GC-GGCGGacgAGCCGGag -5'
12864 3' -65.4 NC_003387.1 + 190 0.66 0.250986
Target:  5'- cGCCCG----GCCGCCaGCUCGGCg-- -3'
miRNA:   3'- -CGGGCgacgCGGCGGaCGAGCCGgag -5'
12864 3' -65.4 NC_003387.1 + 10167 0.66 0.250986
Target:  5'- uGCgCGCcaaucuCGCuCGCCaGCUCGGCgUCg -3'
miRNA:   3'- -CGgGCGac----GCG-GCGGaCGAGCCGgAG- -5'
12864 3' -65.4 NC_003387.1 + 50545 0.66 0.250986
Target:  5'- uGUCgGCgaccaagGCGCCGagCUGCUCGcGgCUCa -3'
miRNA:   3'- -CGGgCGa------CGCGGCg-GACGAGC-CgGAG- -5'
12864 3' -65.4 NC_003387.1 + 6671 0.66 0.245514
Target:  5'- aGCgCGgUGCGCUGCagauccucgacgacGCUCGGCgUCu -3'
miRNA:   3'- -CGgGCgACGCGGCGga------------CGAGCCGgAG- -5'
12864 3' -65.4 NC_003387.1 + 37456 0.66 0.244912
Target:  5'- uGCCaugcuggcggCGCUGCGCCGCCaaaaggUGC-CGGUg-- -3'
miRNA:   3'- -CGG----------GCGACGCGGCGG------ACGaGCCGgag -5'
12864 3' -65.4 NC_003387.1 + 47946 0.66 0.241922
Target:  5'- gGCCUGCgacaugaagucacgGCGCCGgaucgacucgacacuCUUGCcguacacgugagacUCGGCCUCg -3'
miRNA:   3'- -CGGGCGa-------------CGCGGC---------------GGACG--------------AGCCGGAG- -5'
12864 3' -65.4 NC_003387.1 + 28523 0.66 0.238962
Target:  5'- gGUgCGgUGCGCCGUcauaggugccgCUGUUUugGGCCUCg -3'
miRNA:   3'- -CGgGCgACGCGGCG-----------GACGAG--CCGGAG- -5'
12864 3' -65.4 NC_003387.1 + 24831 0.66 0.238961
Target:  5'- gGCCgCGUgUGCGCUGUCUGC--GGCCg- -3'
miRNA:   3'- -CGG-GCG-ACGCGGCGGACGagCCGGag -5'
12864 3' -65.4 NC_003387.1 + 43395 0.66 0.238961
Target:  5'- cGCCCgGCUG-GUCGUgUGCUCGGaggUCa -3'
miRNA:   3'- -CGGG-CGACgCGGCGgACGAGCCgg-AG- -5'
12864 3' -65.4 NC_003387.1 + 11446 0.66 0.238961
Target:  5'- uGCCCGCgcugcagcuCGCCGCCggggcGCUCaaguucauGGCCg- -3'
miRNA:   3'- -CGGGCGac-------GCGGCGGa----CGAG--------CCGGag -5'
12864 3' -65.4 NC_003387.1 + 40493 0.66 0.238373
Target:  5'- aGCgCCGCUGCGCuggcgacCGCCggugGCcCGGCa-- -3'
miRNA:   3'- -CG-GGCGACGCG-------GCGGa---CGaGCCGgag -5'
12864 3' -65.4 NC_003387.1 + 15530 0.66 0.235449
Target:  5'- cGCCUGCugcacgcgcucggggUGCcggGCCGCCaGCUCGGUg-- -3'
miRNA:   3'- -CGGGCG---------------ACG---CGGCGGaCGAGCCGgag -5'
12864 3' -65.4 NC_003387.1 + 19324 0.66 0.233132
Target:  5'- gGCCuCGC-GCGUgaaugUGCCUGCggCGGCgUCc -3'
miRNA:   3'- -CGG-GCGaCGCG-----GCGGACGa-GCCGgAG- -5'
12864 3' -65.4 NC_003387.1 + 48187 0.66 0.233132
Target:  5'- gGCCCGCaagGUGcCCGCaccgGCggcggCGGCCg- -3'
miRNA:   3'- -CGGGCGa--CGC-GGCGga--CGa----GCCGGag -5'
12864 3' -65.4 NC_003387.1 + 5256 0.66 0.233132
Target:  5'- cGCCCGCUGUGCgGgcguaCCUGCa-GGCg-- -3'
miRNA:   3'- -CGGGCGACGCGgC-----GGACGagCCGgag -5'
12864 3' -65.4 NC_003387.1 + 27581 0.66 0.233132
Target:  5'- aGCCCcgaucgGCUGCGCgGUgUGCcgCugguacgagGGCCUCg -3'
miRNA:   3'- -CGGG------CGACGCGgCGgACGa-G---------CCGGAG- -5'
12864 3' -65.4 NC_003387.1 + 33435 0.66 0.233132
Target:  5'- uGCCUGCUGCuGCgCGCCaccaccucGCgcaaggCGGCCg- -3'
miRNA:   3'- -CGGGCGACG-CG-GCGGa-------CGa-----GCCGGag -5'
12864 3' -65.4 NC_003387.1 + 37850 0.66 0.233132
Target:  5'- aCCC-CUGCGcCCGgCgGCUCG-CCUCg -3'
miRNA:   3'- cGGGcGACGC-GGCgGaCGAGCcGGAG- -5'
12864 3' -65.4 NC_003387.1 + 986 0.66 0.233132
Target:  5'- -gCCGCcgagGCGCCGaCCggggucggaUGCgcugCGGCCUUg -3'
miRNA:   3'- cgGGCGa---CGCGGC-GG---------ACGa---GCCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.