Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12864 | 5' | -53.3 | NC_003387.1 | + | 6461 | 1.09 | 0.001531 |
Target: 5'- uCAAUGGCCGACACGACGUCGCUGUAGg -3' miRNA: 3'- -GUUACCGGCUGUGCUGCAGCGACAUC- -5' |
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12864 | 5' | -53.3 | NC_003387.1 | + | 30447 | 0.78 | 0.221021 |
Target: 5'- gCGGUGGCCGAgCACGGCGcccUGCUGUGc -3' miRNA: 3'- -GUUACCGGCU-GUGCUGCa--GCGACAUc -5' |
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12864 | 5' | -53.3 | NC_003387.1 | + | 21600 | 0.77 | 0.245708 |
Target: 5'- ---aGGCCGACGCGGCGcUGCUGg-- -3' miRNA: 3'- guuaCCGGCUGUGCUGCaGCGACauc -5' |
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12864 | 5' | -53.3 | NC_003387.1 | + | 15072 | 0.75 | 0.317399 |
Target: 5'- -cGUGGUCGugACGGCGaCGCUGuUGGa -3' miRNA: 3'- guUACCGGCugUGCUGCaGCGAC-AUC- -5' |
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12864 | 5' | -53.3 | NC_003387.1 | + | 44814 | 0.75 | 0.341773 |
Target: 5'- gAcgGGCUGAC-CGACGUCG-UGUGGa -3' miRNA: 3'- gUuaCCGGCUGuGCUGCAGCgACAUC- -5' |
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12864 | 5' | -53.3 | NC_003387.1 | + | 12014 | 0.74 | 0.358759 |
Target: 5'- --cUGGUCGACACGGCGcaugCGgUGUGGc -3' miRNA: 3'- guuACCGGCUGUGCUGCa---GCgACAUC- -5' |
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12864 | 5' | -53.3 | NC_003387.1 | + | 30910 | 0.72 | 0.472362 |
Target: 5'- --uUGGUCGcCACGGCGUCGCUc--- -3' miRNA: 3'- guuACCGGCuGUGCUGCAGCGAcauc -5' |
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12864 | 5' | -53.3 | NC_003387.1 | + | 39310 | 0.71 | 0.52479 |
Target: 5'- ---cGGCCGACaACGGCGagggcgUGCUGUGa -3' miRNA: 3'- guuaCCGGCUG-UGCUGCa-----GCGACAUc -5' |
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12864 | 5' | -53.3 | NC_003387.1 | + | 13402 | 0.7 | 0.567159 |
Target: 5'- gAGUGGCCGACGguuaaguCGGCGcUCGCcgGUGu -3' miRNA: 3'- gUUACCGGCUGU-------GCUGC-AGCGa-CAUc -5' |
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12864 | 5' | -53.3 | NC_003387.1 | + | 18515 | 0.69 | 0.623718 |
Target: 5'- ---gGGCacCGAcCGCGACGUggCGCUGUGGc -3' miRNA: 3'- guuaCCG--GCU-GUGCUGCA--GCGACAUC- -5' |
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12864 | 5' | -53.3 | NC_003387.1 | + | 9700 | 0.69 | 0.646022 |
Target: 5'- ---gGGCCGugACGGCGg-GCUGa-- -3' miRNA: 3'- guuaCCGGCugUGCUGCagCGACauc -5' |
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12864 | 5' | -53.3 | NC_003387.1 | + | 4925 | 0.69 | 0.646022 |
Target: 5'- --cUGcCCGGCGCGGCGUCGCg---- -3' miRNA: 3'- guuACcGGCUGUGCUGCAGCGacauc -5' |
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12864 | 5' | -53.3 | NC_003387.1 | + | 49193 | 0.69 | 0.646022 |
Target: 5'- ---cGGCCGu--CGACGUUGCUGa-- -3' miRNA: 3'- guuaCCGGCuguGCUGCAGCGACauc -5' |
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12864 | 5' | -53.3 | NC_003387.1 | + | 8524 | 0.69 | 0.657159 |
Target: 5'- ---gGGCCGAC-CGGC-UCGCggGUAGu -3' miRNA: 3'- guuaCCGGCUGuGCUGcAGCGa-CAUC- -5' |
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12864 | 5' | -53.3 | NC_003387.1 | + | 44565 | 0.69 | 0.668273 |
Target: 5'- aAGUGGCCGAgaaaCACGucGCGgUCGCUGc-- -3' miRNA: 3'- gUUACCGGCU----GUGC--UGC-AGCGACauc -5' |
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12864 | 5' | -53.3 | NC_003387.1 | + | 4783 | 0.68 | 0.679352 |
Target: 5'- ---cGGCCcACACGGCGUCGUg---- -3' miRNA: 3'- guuaCCGGcUGUGCUGCAGCGacauc -5' |
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12864 | 5' | -53.3 | NC_003387.1 | + | 40360 | 0.68 | 0.690385 |
Target: 5'- uGcgGGCCGuCGCGGCGgCGUUGg-- -3' miRNA: 3'- gUuaCCGGCuGUGCUGCaGCGACauc -5' |
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12864 | 5' | -53.3 | NC_003387.1 | + | 22665 | 0.68 | 0.690385 |
Target: 5'- ---cGGCCGuCAgGGCG-CGCUcGUGGg -3' miRNA: 3'- guuaCCGGCuGUgCUGCaGCGA-CAUC- -5' |
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12864 | 5' | -53.3 | NC_003387.1 | + | 45222 | 0.68 | 0.70136 |
Target: 5'- ---cGGCCGAUcgugGCGugGUCGgaGUc- -3' miRNA: 3'- guuaCCGGCUG----UGCugCAGCgaCAuc -5' |
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12864 | 5' | -53.3 | NC_003387.1 | + | 45956 | 0.68 | 0.712266 |
Target: 5'- ---cGGCCcGCGCaagggcgaGGCGUgCGCUGUGGg -3' miRNA: 3'- guuaCCGGcUGUG--------CUGCA-GCGACAUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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