miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12865 5' -60.4 NC_003387.1 + 9272 0.67 0.367072
Target:  5'- -cGCCGCcGGUCagcaGCUUGACCUuGGCCu -3'
miRNA:   3'- cuUGGCGcUCAG----CGAGCUGGG-CCGGu -5'
12865 5' -60.4 NC_003387.1 + 173 0.67 0.367072
Target:  5'- uGGCCGaCGGcaagacggUGCUCGACUCGGCCc -3'
miRNA:   3'- cUUGGC-GCUca------GCGAGCUGGGCCGGu -5'
12865 5' -60.4 NC_003387.1 + 15175 0.67 0.364566
Target:  5'- -cGCCGCGAGgugaUCGacgaggaggcccgcGCCCGGCCGc -3'
miRNA:   3'- cuUGGCGCUCagcgAGC--------------UGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 32784 0.68 0.358764
Target:  5'- cGGCCGCGuacCGCcgggUCGACCUGGCgCAg -3'
miRNA:   3'- cUUGGCGCucaGCG----AGCUGGGCCG-GU- -5'
12865 5' -60.4 NC_003387.1 + 2519 0.68 0.358764
Target:  5'- uGACgCGCGGGUCGUcguugcCGuCCCGGUCGc -3'
miRNA:   3'- cUUG-GCGCUCAGCGa-----GCuGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 19928 0.68 0.350588
Target:  5'- uGAGCUGCGcca-GgUCGACCCGGCg- -3'
miRNA:   3'- -CUUGGCGCucagCgAGCUGGGCCGgu -5'
12865 5' -60.4 NC_003387.1 + 16754 0.68 0.342546
Target:  5'- -cGCCGcCGAGggccUC-CUCGACCgCGGCCu -3'
miRNA:   3'- cuUGGC-GCUC----AGcGAGCUGG-GCCGGu -5'
12865 5' -60.4 NC_003387.1 + 49039 0.68 0.342546
Target:  5'- uGAACCGC-AGcCcCUCGGCCuCGGUCAg -3'
miRNA:   3'- -CUUGGCGcUCaGcGAGCUGG-GCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 48258 0.68 0.342546
Target:  5'- -cGCgGCGGGcucggCGgUCGGCUCGGCCu -3'
miRNA:   3'- cuUGgCGCUCa----GCgAGCUGGGCCGGu -5'
12865 5' -60.4 NC_003387.1 + 2038 0.68 0.334637
Target:  5'- cGGCCGCc-GUCGC-CGAgCUGGCCGc -3'
miRNA:   3'- cUUGGCGcuCAGCGaGCUgGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 31944 0.68 0.326863
Target:  5'- aGAuCCGCGccGGUCGCaUC--CCCGGCCGc -3'
miRNA:   3'- -CUuGGCGC--UCAGCG-AGcuGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 44204 0.68 0.326863
Target:  5'- --cCCGCGAGcCGgUCGGCCCGagggacacuuGCCu -3'
miRNA:   3'- cuuGGCGCUCaGCgAGCUGGGC----------CGGu -5'
12865 5' -60.4 NC_003387.1 + 17773 0.68 0.326863
Target:  5'- aAAUCGCGAGcUUGCgcagCGGCaCGGCCGg -3'
miRNA:   3'- cUUGGCGCUC-AGCGa---GCUGgGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 12444 0.68 0.326863
Target:  5'- -cGCUGcCGAGguUCGCUggcggCGGCCUGGCCGc -3'
miRNA:   3'- cuUGGC-GCUC--AGCGA-----GCUGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 4494 0.68 0.326863
Target:  5'- cGAGcCCGCgGAGgcccCGCUCGACC-GGCUg -3'
miRNA:   3'- -CUU-GGCG-CUCa---GCGAGCUGGgCCGGu -5'
12865 5' -60.4 NC_003387.1 + 16119 0.68 0.326863
Target:  5'- cAGCCGCGAGUCGaaCG-CCgGGUUAc -3'
miRNA:   3'- cUUGGCGCUCAGCgaGCuGGgCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 48635 0.68 0.319224
Target:  5'- -cGCCGCGGGUCGCgagcaugCGgcagaACCCGcacGCCGu -3'
miRNA:   3'- cuUGGCGCUCAGCGa------GC-----UGGGC---CGGU- -5'
12865 5' -60.4 NC_003387.1 + 21490 0.68 0.319224
Target:  5'- cGGGCCGggcugguuCGuGUCGCUgcaCGAgCCGGCCGc -3'
miRNA:   3'- -CUUGGC--------GCuCAGCGA---GCUgGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 26596 0.69 0.311719
Target:  5'- cGAGCgGCGAcGgacgCGC-CGACCUGGCgCAg -3'
miRNA:   3'- -CUUGgCGCU-Ca---GCGaGCUGGGCCG-GU- -5'
12865 5' -60.4 NC_003387.1 + 30713 0.69 0.311719
Target:  5'- -cGCCuGCGGGgCGCUCagccgggcagguGACCCGGCUc -3'
miRNA:   3'- cuUGG-CGCUCaGCGAG------------CUGGGCCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.