miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12865 5' -60.4 NC_003387.1 + 17070 0.66 0.428823
Target:  5'- --cCCGCG-GUCGaggUCGgccagugcccGCCCGGCCGc -3'
miRNA:   3'- cuuGGCGCuCAGCg--AGC----------UGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 50360 0.66 0.428823
Target:  5'- uGACCGCGuacguggCGCUCGACgCCgacggcGGCCu -3'
miRNA:   3'- cUUGGCGCuca----GCGAGCUG-GG------CCGGu -5'
12865 5' -60.4 NC_003387.1 + 31026 0.66 0.428823
Target:  5'- cGGGCCGCGc-UCGC-CGAggCGGCCAg -3'
miRNA:   3'- -CUUGGCGCucAGCGaGCUggGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 28126 0.66 0.427898
Target:  5'- uGAUCGcCGAGgccCGCaagcgccccacgaUCGAgCCCGGCCAg -3'
miRNA:   3'- cUUGGC-GCUCa--GCG-------------AGCU-GGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 20484 0.66 0.419629
Target:  5'- --uCCGCGGGUgggguuucCGCUcCGACaCCGGCa- -3'
miRNA:   3'- cuuGGCGCUCA--------GCGA-GCUG-GGCCGgu -5'
12865 5' -60.4 NC_003387.1 + 1316 0.66 0.419629
Target:  5'- -cGCCGCaGG-CGCUCGccggucaCCGGCCGa -3'
miRNA:   3'- cuUGGCGcUCaGCGAGCug-----GGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 24026 0.66 0.419629
Target:  5'- aGAUUGCGuuucacccGUCGCUCGGCCUGuGCUc -3'
miRNA:   3'- cUUGGCGCu-------CAGCGAGCUGGGC-CGGu -5'
12865 5' -60.4 NC_003387.1 + 113 0.66 0.418716
Target:  5'- uGAugCGCGcccgccucgaugcGGUCGCccucgCGAUCCGcGCCGc -3'
miRNA:   3'- -CUugGCGC-------------UCAGCGa----GCUGGGC-CGGU- -5'
12865 5' -60.4 NC_003387.1 + 29697 0.67 0.410556
Target:  5'- uGGCCGagguCGAGgCGCUCGgcggcGCCCaGGCCGa -3'
miRNA:   3'- cUUGGC----GCUCaGCGAGC-----UGGG-CCGGU- -5'
12865 5' -60.4 NC_003387.1 + 33673 0.67 0.410556
Target:  5'- uGGCgGCGAugGUCGacCUCGACUCGGCg- -3'
miRNA:   3'- cUUGgCGCU--CAGC--GAGCUGGGCCGgu -5'
12865 5' -60.4 NC_003387.1 + 28991 0.67 0.405171
Target:  5'- cGACCGCuggaucgccugcgccGAGUCGUUCGccGCCUGGgCGu -3'
miRNA:   3'- cUUGGCG---------------CUCAGCGAGC--UGGGCCgGU- -5'
12865 5' -60.4 NC_003387.1 + 46900 0.67 0.39278
Target:  5'- cAGCC-CGGGUCG-UCGugCaCGGCCGc -3'
miRNA:   3'- cUUGGcGCUCAGCgAGCugG-GCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 45913 0.67 0.39278
Target:  5'- cGAACCGCgccuuGAGcCGCagggCGACCaugucgcgcuCGGCCAg -3'
miRNA:   3'- -CUUGGCG-----CUCaGCGa---GCUGG----------GCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 33399 0.67 0.39278
Target:  5'- -cGCCGCGcucGUCGCUguACUCGGUCAc -3'
miRNA:   3'- cuUGGCGCu--CAGCGAgcUGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 19241 0.67 0.391904
Target:  5'- cGAUCGCGGG-CGC-CGACCgccucggcgacuuCGGCCGc -3'
miRNA:   3'- cUUGGCGCUCaGCGaGCUGG-------------GCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 34697 0.67 0.384081
Target:  5'- -cGCCGUGGGccugguacaUGCggcgCGACCUGGCCGa -3'
miRNA:   3'- cuUGGCGCUCa--------GCGa---GCUGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 17112 0.67 0.384081
Target:  5'- cGAGCUgGCGGGggcgaCGCUCGACgaccucgaCCGGCUg -3'
miRNA:   3'- -CUUGG-CGCUCa----GCGAGCUG--------GGCCGGu -5'
12865 5' -60.4 NC_003387.1 + 14823 0.67 0.384081
Target:  5'- cGGGCaGCGGGUCGCccucggggUUGACgCGGUCAa -3'
miRNA:   3'- -CUUGgCGCUCAGCG--------AGCUGgGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 18279 0.67 0.383218
Target:  5'- -cGCCGCacuacucGAccagCGC-CGACCCGGCCGc -3'
miRNA:   3'- cuUGGCG-------CUca--GCGaGCUGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 36334 0.67 0.375512
Target:  5'- -cGCCaucaGCGuGUCG-UCGGCCUGGCCc -3'
miRNA:   3'- cuUGG----CGCuCAGCgAGCUGGGCCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.