miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12865 5' -60.4 NC_003387.1 + 12444 0.68 0.326863
Target:  5'- -cGCUGcCGAGguUCGCUggcggCGGCCUGGCCGc -3'
miRNA:   3'- cuUGGC-GCUC--AGCGA-----GCUGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 30713 0.69 0.311719
Target:  5'- -cGCCuGCGGGgCGCUCagccgggcagguGACCCGGCUc -3'
miRNA:   3'- cuUGG-CGCUCaGCGAG------------CUGGGCCGGu -5'
12865 5' -60.4 NC_003387.1 + 29996 0.71 0.231443
Target:  5'- cGACCGCGAGUaCGCcCGacuggucgguaucGCCCaGGCCGc -3'
miRNA:   3'- cUUGGCGCUCA-GCGaGC-------------UGGG-CCGGU- -5'
12865 5' -60.4 NC_003387.1 + 7214 0.73 0.153117
Target:  5'- uGGCCGCGG--UGCU-GACCCGGCCGa -3'
miRNA:   3'- cUUGGCGCUcaGCGAgCUGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 113 0.66 0.418716
Target:  5'- uGAugCGCGcccgccucgaugcGGUCGCccucgCGAUCCGcGCCGc -3'
miRNA:   3'- -CUugGCGC-------------UCAGCGa----GCUGGGC-CGGU- -5'
12865 5' -60.4 NC_003387.1 + 173 0.67 0.367072
Target:  5'- uGGCCGaCGGcaagacggUGCUCGACUCGGCCc -3'
miRNA:   3'- cUUGGC-GCUca------GCGAGCUGGGCCGGu -5'
12865 5' -60.4 NC_003387.1 + 14472 0.69 0.297114
Target:  5'- uGGCUGCGuGUgcUGCUCGGCgaGGCCAc -3'
miRNA:   3'- cUUGGCGCuCA--GCGAGCUGggCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 27207 0.74 0.137598
Target:  5'- cAACCgGCGcaAGUCuGCggUCGACCCGGCCGa -3'
miRNA:   3'- cUUGG-CGC--UCAG-CG--AGCUGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 15175 0.67 0.364566
Target:  5'- -cGCCGCGAGgugaUCGacgaggaggcccgcGCCCGGCCGc -3'
miRNA:   3'- cuUGGCGCUCagcgAGC--------------UGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 18545 0.74 0.133951
Target:  5'- uGugCGCGAGUCGUUCGAgCgcaaGGCCGa -3'
miRNA:   3'- cUugGCGCUCAGCGAGCUgGg---CCGGU- -5'
12865 5' -60.4 NC_003387.1 + 31734 0.69 0.304349
Target:  5'- -cGCagGCGAGUuaggggugucccUGCUCGACCUGGUCGc -3'
miRNA:   3'- cuUGg-CGCUCA------------GCGAGCUGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 31944 0.68 0.326863
Target:  5'- aGAuCCGCGccGGUCGCaUC--CCCGGCCGc -3'
miRNA:   3'- -CUuGGCGC--UCAGCG-AGcuGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 44705 0.7 0.26951
Target:  5'- -cGCCGCGucGGUgaCGUUCGuuaugccucGCCCGGCCGg -3'
miRNA:   3'- cuUGGCGC--UCA--GCGAGC---------UGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 47005 0.7 0.24401
Target:  5'- cGGGCCGCcuGGU-GCUCGacuucauuggcgGCCCGGCCGg -3'
miRNA:   3'- -CUUGGCGc-UCAgCGAGC------------UGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 10505 0.71 0.209554
Target:  5'- aGAUCaGCGGGgCGCUCGGCUCGGCg- -3'
miRNA:   3'- cUUGG-CGCUCaGCGAGCUGGGCCGgu -5'
12865 5' -60.4 NC_003387.1 + 30273 0.73 0.157237
Target:  5'- -uACCGCGAGgccaaCGCcgCGGCCCGcGCCu -3'
miRNA:   3'- cuUGGCGCUCa----GCGa-GCUGGGC-CGGu -5'
12865 5' -60.4 NC_003387.1 + 50360 0.66 0.428823
Target:  5'- uGACCGCGuacguggCGCUCGACgCCgacggcGGCCu -3'
miRNA:   3'- cUUGGCGCuca----GCGAGCUG-GG------CCGGu -5'
12865 5' -60.4 NC_003387.1 + 20484 0.66 0.419629
Target:  5'- --uCCGCGGGUgggguuucCGCUcCGACaCCGGCa- -3'
miRNA:   3'- cuuGGCGCUCA--------GCGA-GCUG-GGCCGgu -5'
12865 5' -60.4 NC_003387.1 + 46900 0.67 0.39278
Target:  5'- cAGCC-CGGGUCG-UCGugCaCGGCCGc -3'
miRNA:   3'- cUUGGcGCUCAGCgAGCugG-GCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 18279 0.67 0.383218
Target:  5'- -cGCCGCacuacucGAccagCGC-CGACCCGGCCGc -3'
miRNA:   3'- cuUGGCG-------CUca--GCGaGCUGGGCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.