miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12865 5' -60.4 NC_003387.1 + 5131 0.71 0.214442
Target:  5'- -cGCCGCacgcgacGAGgggCGCUCGGCgCCGGUCGg -3'
miRNA:   3'- cuUGGCG-------CUCa--GCGAGCUG-GGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 2166 0.71 0.214991
Target:  5'- uGAGCCGCGAG-CaGCUCGGCgCCuuGGUCGc -3'
miRNA:   3'- -CUUGGCGCUCaG-CGAGCUG-GG--CCGGU- -5'
12865 5' -60.4 NC_003387.1 + 9615 0.71 0.220548
Target:  5'- -cGCCGCGccgucgCGCUCGuACCCGGCg- -3'
miRNA:   3'- cuUGGCGCuca---GCGAGC-UGGGCCGgu -5'
12865 5' -60.4 NC_003387.1 + 40405 0.71 0.225081
Target:  5'- -uACgCGCGAggaugcuGUCGCUCGugccgguGCCCGGCCc -3'
miRNA:   3'- cuUG-GCGCU-------CAGCGAGC-------UGGGCCGGu -5'
12865 5' -60.4 NC_003387.1 + 29996 0.71 0.231443
Target:  5'- cGACCGCGAGUaCGCcCGacuggucgguaucGCCCaGGCCGc -3'
miRNA:   3'- cUUGGCGCUCA-GCGaGC-------------UGGG-CCGGU- -5'
12865 5' -60.4 NC_003387.1 + 28172 0.71 0.232029
Target:  5'- cGAACCcgGCGAcaguuUCGCUCGGCCCcucGCCAa -3'
miRNA:   3'- -CUUGG--CGCUc----AGCGAGCUGGGc--CGGU- -5'
12865 5' -60.4 NC_003387.1 + 47005 0.7 0.24401
Target:  5'- cGGGCCGCcuGGU-GCUCGacuucauuggcgGCCCGGCCGg -3'
miRNA:   3'- -CUUGGCGc-UCAgCGAGC------------UGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 22741 0.7 0.2565
Target:  5'- --cUCGCG-GUCGCUCGcCuuGGCCu -3'
miRNA:   3'- cuuGGCGCuCAGCGAGCuGggCCGGu -5'
12865 5' -60.4 NC_003387.1 + 33212 0.7 0.26951
Target:  5'- cAAgCGCGAGgccCGCUCGGCgaUGGCCGu -3'
miRNA:   3'- cUUgGCGCUCa--GCGAGCUGg-GCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 44705 0.7 0.26951
Target:  5'- -cGCCGCGucGGUgaCGUUCGuuaugccucGCCCGGCCGg -3'
miRNA:   3'- cuUGGCGC--UCA--GCGAGC---------UGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 19116 0.7 0.26951
Target:  5'- gGAGgCGCGcAGUCGaucaUCGACCCGaCCGg -3'
miRNA:   3'- -CUUgGCGC-UCAGCg---AGCUGGGCcGGU- -5'
12865 5' -60.4 NC_003387.1 + 27242 0.69 0.276211
Target:  5'- uGACaCGCGcGGUCGaggCGGCCCGGCa- -3'
miRNA:   3'- cUUG-GCGC-UCAGCga-GCUGGGCCGgu -5'
12865 5' -60.4 NC_003387.1 + 6497 0.69 0.283045
Target:  5'- cGGGCCGCGAaggcaGUUGCgUCGGCCgGGUgGg -3'
miRNA:   3'- -CUUGGCGCU-----CAGCG-AGCUGGgCCGgU- -5'
12865 5' -60.4 NC_003387.1 + 14472 0.69 0.297114
Target:  5'- uGGCUGCGuGUgcUGCUCGGCgaGGCCAc -3'
miRNA:   3'- cUUGGCGCuCA--GCGAGCUGggCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 34969 0.69 0.304349
Target:  5'- -cGCCGUGAugagcgguGUgGCcccuggCGGCCCGGCCGg -3'
miRNA:   3'- cuUGGCGCU--------CAgCGa-----GCUGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 31734 0.69 0.304349
Target:  5'- -cGCagGCGAGUuaggggugucccUGCUCGACCUGGUCGc -3'
miRNA:   3'- cuUGg-CGCUCA------------GCGAGCUGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 26596 0.69 0.311719
Target:  5'- cGAGCgGCGAcGgacgCGC-CGACCUGGCgCAg -3'
miRNA:   3'- -CUUGgCGCU-Ca---GCGaGCUGGGCCG-GU- -5'
12865 5' -60.4 NC_003387.1 + 30713 0.69 0.311719
Target:  5'- -cGCCuGCGGGgCGCUCagccgggcagguGACCCGGCUc -3'
miRNA:   3'- cuUGG-CGCUCaGCGAG------------CUGGGCCGGu -5'
12865 5' -60.4 NC_003387.1 + 21490 0.68 0.319224
Target:  5'- cGGGCCGggcugguuCGuGUCGCUgcaCGAgCCGGCCGc -3'
miRNA:   3'- -CUUGGC--------GCuCAGCGA---GCUgGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 48635 0.68 0.319224
Target:  5'- -cGCCGCGGGUCGCgagcaugCGgcagaACCCGcacGCCGu -3'
miRNA:   3'- cuUGGCGCUCAGCGa------GC-----UGGGC---CGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.