Results 21 - 40 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12865 | 5' | -60.4 | NC_003387.1 | + | 31348 | 0.66 | 0.457099 |
Target: 5'- ---gCGCGGGUCGaaCaGCaCCGGCCAg -3' miRNA: 3'- cuugGCGCUCAGCgaGcUG-GGCCGGU- -5' |
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12865 | 5' | -60.4 | NC_003387.1 | + | 5784 | 0.66 | 0.447561 |
Target: 5'- -cGCCGCGGaUCGacacCUCGguGCCCGGCuCAa -3' miRNA: 3'- cuUGGCGCUcAGC----GAGC--UGGGCCG-GU- -5' |
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12865 | 5' | -60.4 | NC_003387.1 | + | 47840 | 0.66 | 0.447561 |
Target: 5'- uAGCCGUucGUCGC-CGcCUCGGCCu -3' miRNA: 3'- cUUGGCGcuCAGCGaGCuGGGCCGGu -5' |
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12865 | 5' | -60.4 | NC_003387.1 | + | 1933 | 0.66 | 0.438134 |
Target: 5'- cGAUCGUGcAG-CGCaUGAUCCGGCCGc -3' miRNA: 3'- cUUGGCGC-UCaGCGaGCUGGGCCGGU- -5' |
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12865 | 5' | -60.4 | NC_003387.1 | + | 44384 | 0.66 | 0.466744 |
Target: 5'- cGGCaCGUcgGGGUCGUcgaggUCGGCCgGGCCGu -3' miRNA: 3'- cUUG-GCG--CUCAGCG-----AGCUGGgCCGGU- -5' |
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12865 | 5' | -60.4 | NC_003387.1 | + | 31026 | 0.66 | 0.428823 |
Target: 5'- cGGGCCGCGc-UCGC-CGAggCGGCCAg -3' miRNA: 3'- -CUUGGCGCucAGCGaGCUggGCCGGU- -5' |
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12865 | 5' | -60.4 | NC_003387.1 | + | 42470 | 0.66 | 0.438134 |
Target: 5'- cGACCuuGAGcccgCGCUCGGCgCGGCUc -3' miRNA: 3'- cUUGGcgCUCa---GCGAGCUGgGCCGGu -5' |
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12865 | 5' | -60.4 | NC_003387.1 | + | 12343 | 0.66 | 0.438134 |
Target: 5'- -cGCCGcCGAcGUCGaggccCUUGGCCCcGGCCGc -3' miRNA: 3'- cuUGGC-GCU-CAGC-----GAGCUGGG-CCGGU- -5' |
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12865 | 5' | -60.4 | NC_003387.1 | + | 17112 | 0.67 | 0.384081 |
Target: 5'- cGAGCUgGCGGGggcgaCGCUCGACgaccucgaCCGGCUg -3' miRNA: 3'- -CUUGG-CGCUCa----GCGAGCUG--------GGCCGGu -5' |
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12865 | 5' | -60.4 | NC_003387.1 | + | 29697 | 0.67 | 0.410556 |
Target: 5'- uGGCCGagguCGAGgCGCUCGgcggcGCCCaGGCCGa -3' miRNA: 3'- cUUGGC----GCUCaGCGAGC-----UGGG-CCGGU- -5' |
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12865 | 5' | -60.4 | NC_003387.1 | + | 46900 | 0.67 | 0.39278 |
Target: 5'- cAGCC-CGGGUCG-UCGugCaCGGCCGc -3' miRNA: 3'- cUUGGcGCUCAGCgAGCugG-GCCGGU- -5' |
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12865 | 5' | -60.4 | NC_003387.1 | + | 36334 | 0.67 | 0.375512 |
Target: 5'- -cGCCaucaGCGuGUCG-UCGGCCUGGCCc -3' miRNA: 3'- cuUGG----CGCuCAGCgAGCUGGGCCGGu -5' |
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12865 | 5' | -60.4 | NC_003387.1 | + | 173 | 0.67 | 0.367072 |
Target: 5'- uGGCCGaCGGcaagacggUGCUCGACUCGGCCc -3' miRNA: 3'- cUUGGC-GCUca------GCGAGCUGGGCCGGu -5' |
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12865 | 5' | -60.4 | NC_003387.1 | + | 15175 | 0.67 | 0.364566 |
Target: 5'- -cGCCGCGAGgugaUCGacgaggaggcccgcGCCCGGCCGc -3' miRNA: 3'- cuUGGCGCUCagcgAGC--------------UGGGCCGGU- -5' |
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12865 | 5' | -60.4 | NC_003387.1 | + | 45913 | 0.67 | 0.39278 |
Target: 5'- cGAACCGCgccuuGAGcCGCagggCGACCaugucgcgcuCGGCCAg -3' miRNA: 3'- -CUUGGCG-----CUCaGCGa---GCUGG----------GCCGGU- -5' |
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12865 | 5' | -60.4 | NC_003387.1 | + | 33673 | 0.67 | 0.410556 |
Target: 5'- uGGCgGCGAugGUCGacCUCGACUCGGCg- -3' miRNA: 3'- cUUGgCGCU--CAGC--GAGCUGGGCCGgu -5' |
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12865 | 5' | -60.4 | NC_003387.1 | + | 19241 | 0.67 | 0.391904 |
Target: 5'- cGAUCGCGGG-CGC-CGACCgccucggcgacuuCGGCCGc -3' miRNA: 3'- cUUGGCGCUCaGCGaGCUGG-------------GCCGGU- -5' |
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12865 | 5' | -60.4 | NC_003387.1 | + | 14823 | 0.67 | 0.384081 |
Target: 5'- cGGGCaGCGGGUCGCccucggggUUGACgCGGUCAa -3' miRNA: 3'- -CUUGgCGCUCAGCG--------AGCUGgGCCGGU- -5' |
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12865 | 5' | -60.4 | NC_003387.1 | + | 9272 | 0.67 | 0.367072 |
Target: 5'- -cGCCGCcGGUCagcaGCUUGACCUuGGCCu -3' miRNA: 3'- cuUGGCGcUCAG----CGAGCUGGG-CCGGu -5' |
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12865 | 5' | -60.4 | NC_003387.1 | + | 28991 | 0.67 | 0.405171 |
Target: 5'- cGACCGCuggaucgccugcgccGAGUCGUUCGccGCCUGGgCGu -3' miRNA: 3'- cUUGGCG---------------CUCAGCGAGC--UGGGCCgGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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