miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12865 5' -60.4 NC_003387.1 + 11329 0.66 0.466744
Target:  5'- -uGCUGCGccucGGUCGCcCGgcGCUCGGCCu -3'
miRNA:   3'- cuUGGCGC----UCAGCGaGC--UGGGCCGGu -5'
12865 5' -60.4 NC_003387.1 + 11683 0.73 0.161458
Target:  5'- cGAUCGCGugggugucaauGUCGCcgucgacgcagUCGACCCGGCCGu -3'
miRNA:   3'- cUUGGCGCu----------CAGCG-----------AGCUGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 12343 0.66 0.438134
Target:  5'- -cGCCGcCGAcGUCGaggccCUUGGCCCcGGCCGc -3'
miRNA:   3'- cuUGGC-GCU-CAGC-----GAGCUGGG-CCGGU- -5'
12865 5' -60.4 NC_003387.1 + 12444 0.68 0.326863
Target:  5'- -cGCUGcCGAGguUCGCUggcggCGGCCUGGCCGc -3'
miRNA:   3'- cuUGGC-GCUC--AGCGA-----GCUGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 12552 0.66 0.466744
Target:  5'- -uGCUGCGAGg-GCUCGACgacgauCgGGCCGc -3'
miRNA:   3'- cuUGGCGCUCagCGAGCUG------GgCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 13159 0.66 0.45614
Target:  5'- -cACCGCGugcagaaGGcCGagcgCGACCUGGCCGa -3'
miRNA:   3'- cuUGGCGC-------UCaGCga--GCUGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 13668 0.66 0.466744
Target:  5'- cAACCGUgaguaagcacGAGUCG-UCGACC-GGCCGc -3'
miRNA:   3'- cUUGGCG----------CUCAGCgAGCUGGgCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 14472 0.69 0.297114
Target:  5'- uGGCUGCGuGUgcUGCUCGGCgaGGCCAc -3'
miRNA:   3'- cUUGGCGCuCA--GCGAGCUGggCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 14823 0.67 0.384081
Target:  5'- cGGGCaGCGGGUCGCccucggggUUGACgCGGUCAa -3'
miRNA:   3'- -CUUGgCGCUCAGCG--------AGCUGgGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 15175 0.67 0.364566
Target:  5'- -cGCCGCGAGgugaUCGacgaggaggcccgcGCCCGGCCGc -3'
miRNA:   3'- cuUGGCGCUCagcgAGC--------------UGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 15583 0.66 0.466744
Target:  5'- -cGCCcaGCGAGU-GCccaaccaucaCGGCCCGGCCGa -3'
miRNA:   3'- cuUGG--CGCUCAgCGa---------GCUGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 15684 0.72 0.188982
Target:  5'- aGGCCGUcaGuGUCGC-CGuGCCCGGCCAu -3'
miRNA:   3'- cUUGGCG--CuCAGCGaGC-UGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 16119 0.68 0.326863
Target:  5'- cAGCCGCGAGUCGaaCG-CCgGGUUAc -3'
miRNA:   3'- cUUGGCGCUCAGCgaGCuGGgCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 16754 0.68 0.342546
Target:  5'- -cGCCGcCGAGggccUC-CUCGACCgCGGCCu -3'
miRNA:   3'- cuUGGC-GCUC----AGcGAGCUGG-GCCGGu -5'
12865 5' -60.4 NC_003387.1 + 17070 0.66 0.428823
Target:  5'- --cCCGCG-GUCGaggUCGgccagugcccGCCCGGCCGc -3'
miRNA:   3'- cuuGGCGCuCAGCg--AGC----------UGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 17112 0.67 0.384081
Target:  5'- cGAGCUgGCGGGggcgaCGCUCGACgaccucgaCCGGCUg -3'
miRNA:   3'- -CUUGG-CGCUCa----GCGAGCUG--------GGCCGGu -5'
12865 5' -60.4 NC_003387.1 + 17773 0.68 0.326863
Target:  5'- aAAUCGCGAGcUUGCgcagCGGCaCGGCCGg -3'
miRNA:   3'- cUUGGCGCUC-AGCGa---GCUGgGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 18146 0.73 0.149094
Target:  5'- -cACCGCGGGUaaccCGUcaUCGGCCCGGCg- -3'
miRNA:   3'- cuUGGCGCUCA----GCG--AGCUGGGCCGgu -5'
12865 5' -60.4 NC_003387.1 + 18279 0.67 0.383218
Target:  5'- -cGCCGCacuacucGAccagCGC-CGACCCGGCCGc -3'
miRNA:   3'- cuUGGCG-------CUca--GCGaGCUGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 18545 0.74 0.133951
Target:  5'- uGugCGCGAGUCGUUCGAgCgcaaGGCCGa -3'
miRNA:   3'- cUugGCGCUCAGCGAGCUgGg---CCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.