miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12865 5' -60.4 NC_003387.1 + 113 0.66 0.418716
Target:  5'- uGAugCGCGcccgccucgaugcGGUCGCccucgCGAUCCGcGCCGc -3'
miRNA:   3'- -CUugGCGC-------------UCAGCGa----GCUGGGC-CGGU- -5'
12865 5' -60.4 NC_003387.1 + 173 0.67 0.367072
Target:  5'- uGGCCGaCGGcaagacggUGCUCGACUCGGCCc -3'
miRNA:   3'- cUUGGC-GCUca------GCGAGCUGGGCCGGu -5'
12865 5' -60.4 NC_003387.1 + 1316 0.66 0.419629
Target:  5'- -cGCCGCaGG-CGCUCGccggucaCCGGCCGa -3'
miRNA:   3'- cuUGGCGcUCaGCGAGCug-----GGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 1933 0.66 0.438134
Target:  5'- cGAUCGUGcAG-CGCaUGAUCCGGCCGc -3'
miRNA:   3'- cUUGGCGC-UCaGCGaGCUGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 2038 0.68 0.334637
Target:  5'- cGGCCGCc-GUCGC-CGAgCUGGCCGc -3'
miRNA:   3'- cUUGGCGcuCAGCGaGCUgGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 2166 0.71 0.214991
Target:  5'- uGAGCCGCGAG-CaGCUCGGCgCCuuGGUCGc -3'
miRNA:   3'- -CUUGGCGCUCaG-CGAGCUG-GG--CCGGU- -5'
12865 5' -60.4 NC_003387.1 + 2519 0.68 0.358764
Target:  5'- uGACgCGCGGGUCGUcguugcCGuCCCGGUCGc -3'
miRNA:   3'- cUUG-GCGCUCAGCGa-----GCuGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 4289 0.73 0.170206
Target:  5'- aGGCCGCGGGcgagcagCGCaccgCGACCCGGCa- -3'
miRNA:   3'- cUUGGCGCUCa------GCGa---GCUGGGCCGgu -5'
12865 5' -60.4 NC_003387.1 + 4494 0.68 0.326863
Target:  5'- cGAGcCCGCgGAGgcccCGCUCGACC-GGCUg -3'
miRNA:   3'- -CUU-GGCG-CUCa---GCGAGCUGGgCCGGu -5'
12865 5' -60.4 NC_003387.1 + 5131 0.71 0.214442
Target:  5'- -cGCCGCacgcgacGAGgggCGCUCGGCgCCGGUCGg -3'
miRNA:   3'- cuUGGCG-------CUCa--GCGAGCUG-GGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 5784 0.66 0.447561
Target:  5'- -cGCCGCGGaUCGacacCUCGguGCCCGGCuCAa -3'
miRNA:   3'- cuUGGCGCUcAGC----GAGC--UGGGCCG-GU- -5'
12865 5' -60.4 NC_003387.1 + 5963 1.07 0.000455
Target:  5'- cGAACCGCGAGUCGCUCGACCCGGCCGg -3'
miRNA:   3'- -CUUGGCGCUCAGCGAGCUGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 6358 0.72 0.188982
Target:  5'- -cACCGUGucgCGCUUGGCCuCGGCCGc -3'
miRNA:   3'- cuUGGCGCucaGCGAGCUGG-GCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 6497 0.69 0.283045
Target:  5'- cGGGCCGCGAaggcaGUUGCgUCGGCCgGGUgGg -3'
miRNA:   3'- -CUUGGCGCU-----CAGCG-AGCUGGgCCGgU- -5'
12865 5' -60.4 NC_003387.1 + 7214 0.73 0.153117
Target:  5'- uGGCCGCGG--UGCU-GACCCGGCCGa -3'
miRNA:   3'- cUUGGCGCUcaGCGAgCUGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 7519 0.73 0.16578
Target:  5'- cGGCCGCGGGUCGaaCGGgCCGGgCAa -3'
miRNA:   3'- cUUGGCGCUCAGCgaGCUgGGCCgGU- -5'
12865 5' -60.4 NC_003387.1 + 7620 0.75 0.120235
Target:  5'- -cACCGCGGcGUCGa-CGACCUGGCCGc -3'
miRNA:   3'- cuUGGCGCU-CAGCgaGCUGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 9272 0.67 0.367072
Target:  5'- -cGCCGCcGGUCagcaGCUUGACCUuGGCCu -3'
miRNA:   3'- cuUGGCGcUCAG----CGAGCUGGG-CCGGu -5'
12865 5' -60.4 NC_003387.1 + 9615 0.71 0.220548
Target:  5'- -cGCCGCGccgucgCGCUCGuACCCGGCg- -3'
miRNA:   3'- cuUGGCGCuca---GCGAGC-UGGGCCGgu -5'
12865 5' -60.4 NC_003387.1 + 10505 0.71 0.209554
Target:  5'- aGAUCaGCGGGgCGCUCGGCUCGGCg- -3'
miRNA:   3'- cUUGG-CGCUCaGCGAGCUGGGCCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.