miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12865 5' -60.4 NC_003387.1 + 5963 1.07 0.000455
Target:  5'- cGAACCGCGAGUCGCUCGACCCGGCCGg -3'
miRNA:   3'- -CUUGGCGCUCAGCGAGCUGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 24789 0.77 0.075351
Target:  5'- gGAACCGCucgGGGUCGCggcCGACCUGGCgCAg -3'
miRNA:   3'- -CUUGGCG---CUCAGCGa--GCUGGGCCG-GU- -5'
12865 5' -60.4 NC_003387.1 + 23023 0.76 0.102094
Target:  5'- -cGCCGcCGAG-CGcCUCGACCuCGGCCAc -3'
miRNA:   3'- cuUGGC-GCUCaGC-GAGCUGG-GCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 25490 0.75 0.107835
Target:  5'- cGACCGCGcguGUCaGCUCGGCCgGGUCGa -3'
miRNA:   3'- cUUGGCGCu--CAG-CGAGCUGGgCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 41450 0.75 0.113877
Target:  5'- aGAGCCuugauCGAGUCGC-CGACgCGGCCGa -3'
miRNA:   3'- -CUUGGc----GCUCAGCGaGCUGgGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 33773 0.75 0.113877
Target:  5'- -cGCCGCGAG-CgGUUUGGCCCGGCUg -3'
miRNA:   3'- cuUGGCGCUCaG-CGAGCUGGGCCGGu -5'
12865 5' -60.4 NC_003387.1 + 7620 0.75 0.120235
Target:  5'- -cACCGCGGcGUCGa-CGACCUGGCCGc -3'
miRNA:   3'- cuUGGCGCU-CAGCgaGCUGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 18545 0.74 0.133951
Target:  5'- uGugCGCGAGUCGUUCGAgCgcaaGGCCGa -3'
miRNA:   3'- cUugGCGCUCAGCGAGCUgGg---CCGGU- -5'
12865 5' -60.4 NC_003387.1 + 27207 0.74 0.137598
Target:  5'- cAACCgGCGcaAGUCuGCggUCGACCCGGCCGa -3'
miRNA:   3'- cUUGG-CGC--UCAG-CG--AGCUGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 18146 0.73 0.149094
Target:  5'- -cACCGCGGGUaaccCGUcaUCGGCCCGGCg- -3'
miRNA:   3'- cuUGGCGCUCA----GCG--AGCUGGGCCGgu -5'
12865 5' -60.4 NC_003387.1 + 7214 0.73 0.153117
Target:  5'- uGGCCGCGG--UGCU-GACCCGGCCGa -3'
miRNA:   3'- cUUGGCGCUcaGCGAgCUGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 30273 0.73 0.157237
Target:  5'- -uACCGCGAGgccaaCGCcgCGGCCCGcGCCu -3'
miRNA:   3'- cuUGGCGCUCa----GCGa-GCUGGGC-CGGu -5'
12865 5' -60.4 NC_003387.1 + 11683 0.73 0.161458
Target:  5'- cGAUCGCGugggugucaauGUCGCcgucgacgcagUCGACCCGGCCGu -3'
miRNA:   3'- cUUGGCGCu----------CAGCG-----------AGCUGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 7519 0.73 0.16578
Target:  5'- cGGCCGCGGGUCGaaCGGgCCGGgCAa -3'
miRNA:   3'- cUUGGCGCUCAGCgaGCUgGGCCgGU- -5'
12865 5' -60.4 NC_003387.1 + 4289 0.73 0.170206
Target:  5'- aGGCCGCGGGcgagcagCGCaccgCGACCCGGCa- -3'
miRNA:   3'- cUUGGCGCUCa------GCGa---GCUGGGCCGgu -5'
12865 5' -60.4 NC_003387.1 + 15684 0.72 0.188982
Target:  5'- aGGCCGUcaGuGUCGC-CGuGCCCGGCCAu -3'
miRNA:   3'- cUUGGCG--CuCAGCGaGC-UGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 6358 0.72 0.188982
Target:  5'- -cACCGUGucgCGCUUGGCCuCGGCCGc -3'
miRNA:   3'- cuUGGCGCucaGCGAGCUGG-GCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 36693 0.72 0.193952
Target:  5'- -cACCGCGGGcaaGCugaaucUCGACCCGGUCGa -3'
miRNA:   3'- cuUGGCGCUCag-CG------AGCUGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 44582 0.71 0.204237
Target:  5'- --gUCGCG-GUCGCU--GCCCGGCCGg -3'
miRNA:   3'- cuuGGCGCuCAGCGAgcUGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 10505 0.71 0.209554
Target:  5'- aGAUCaGCGGGgCGCUCGGCUCGGCg- -3'
miRNA:   3'- cUUGG-CGCUCaGCGAGCUGGGCCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.