miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12865 5' -60.4 NC_003387.1 + 44384 0.66 0.466744
Target:  5'- cGGCaCGUcgGGGUCGUcgaggUCGGCCgGGCCGu -3'
miRNA:   3'- cUUG-GCG--CUCAGCG-----AGCUGGgCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 31026 0.66 0.428823
Target:  5'- cGGGCCGCGc-UCGC-CGAggCGGCCAg -3'
miRNA:   3'- -CUUGGCGCucAGCGaGCUggGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 17070 0.66 0.428823
Target:  5'- --cCCGCG-GUCGaggUCGgccagugcccGCCCGGCCGc -3'
miRNA:   3'- cuuGGCGCuCAGCg--AGC----------UGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 1316 0.66 0.419629
Target:  5'- -cGCCGCaGG-CGCUCGccggucaCCGGCCGa -3'
miRNA:   3'- cuUGGCGcUCaGCGAGCug-----GGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 113 0.66 0.418716
Target:  5'- uGAugCGCGcccgccucgaugcGGUCGCccucgCGAUCCGcGCCGc -3'
miRNA:   3'- -CUugGCGC-------------UCAGCGa----GCUGGGC-CGGU- -5'
12865 5' -60.4 NC_003387.1 + 20484 0.66 0.419629
Target:  5'- --uCCGCGGGUgggguuucCGCUcCGACaCCGGCa- -3'
miRNA:   3'- cuuGGCGCUCA--------GCGA-GCUG-GGCCGgu -5'
12865 5' -60.4 NC_003387.1 + 24026 0.66 0.419629
Target:  5'- aGAUUGCGuuucacccGUCGCUCGGCCUGuGCUc -3'
miRNA:   3'- cUUGGCGCu-------CAGCGAGCUGGGC-CGGu -5'
12865 5' -60.4 NC_003387.1 + 28126 0.66 0.427898
Target:  5'- uGAUCGcCGAGgccCGCaagcgccccacgaUCGAgCCCGGCCAg -3'
miRNA:   3'- cUUGGC-GCUCa--GCG-------------AGCU-GGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 50360 0.66 0.428823
Target:  5'- uGACCGCGuacguggCGCUCGACgCCgacggcGGCCu -3'
miRNA:   3'- cUUGGCGCuca----GCGAGCUG-GG------CCGGu -5'
12865 5' -60.4 NC_003387.1 + 12343 0.66 0.438134
Target:  5'- -cGCCGcCGAcGUCGaggccCUUGGCCCcGGCCGc -3'
miRNA:   3'- cuUGGC-GCU-CAGC-----GAGCUGGG-CCGGU- -5'
12865 5' -60.4 NC_003387.1 + 42470 0.66 0.438134
Target:  5'- cGACCuuGAGcccgCGCUCGGCgCGGCUc -3'
miRNA:   3'- cUUGGcgCUCa---GCGAGCUGgGCCGGu -5'
12865 5' -60.4 NC_003387.1 + 1933 0.66 0.438134
Target:  5'- cGAUCGUGcAG-CGCaUGAUCCGGCCGc -3'
miRNA:   3'- cUUGGCGC-UCaGCGaGCUGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 15583 0.66 0.466744
Target:  5'- -cGCCcaGCGAGU-GCccaaccaucaCGGCCCGGCCGa -3'
miRNA:   3'- cuUGG--CGCUCAgCGa---------GCUGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 13668 0.66 0.466744
Target:  5'- cAACCGUgaguaagcacGAGUCG-UCGACC-GGCCGc -3'
miRNA:   3'- cUUGGCG----------CUCAGCgAGCUGGgCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 12552 0.66 0.466744
Target:  5'- -uGCUGCGAGg-GCUCGACgacgauCgGGCCGc -3'
miRNA:   3'- cuUGGCGCUCagCGAGCUG------GgCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 11329 0.66 0.466744
Target:  5'- -uGCUGCGccucGGUCGCcCGgcGCUCGGCCu -3'
miRNA:   3'- cuUGGCGC----UCAGCGaGC--UGGGCCGGu -5'
12865 5' -60.4 NC_003387.1 + 27954 0.66 0.457099
Target:  5'- cGGGgCGCucGgcgUGCUCGGCuuGGCCGg -3'
miRNA:   3'- -CUUgGCGcuCa--GCGAGCUGggCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 31348 0.66 0.457099
Target:  5'- ---gCGCGGGUCGaaCaGCaCCGGCCAg -3'
miRNA:   3'- cuugGCGCUCAGCgaGcUG-GGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 5784 0.66 0.447561
Target:  5'- -cGCCGCGGaUCGacacCUCGguGCCCGGCuCAa -3'
miRNA:   3'- cuUGGCGCUcAGC----GAGC--UGGGCCG-GU- -5'
12865 5' -60.4 NC_003387.1 + 47840 0.66 0.447561
Target:  5'- uAGCCGUucGUCGC-CGcCUCGGCCu -3'
miRNA:   3'- cUUGGCGcuCAGCGaGCuGGGCCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.