miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12865 5' -60.4 NC_003387.1 + 33773 0.75 0.113877
Target:  5'- -cGCCGCGAG-CgGUUUGGCCCGGCUg -3'
miRNA:   3'- cuUGGCGCUCaG-CGAGCUGGGCCGGu -5'
12865 5' -60.4 NC_003387.1 + 14472 0.69 0.297114
Target:  5'- uGGCUGCGuGUgcUGCUCGGCgaGGCCAc -3'
miRNA:   3'- cUUGGCGCuCA--GCGAGCUGggCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 30713 0.69 0.311719
Target:  5'- -cGCCuGCGGGgCGCUCagccgggcagguGACCCGGCUc -3'
miRNA:   3'- cuUGG-CGCUCaGCGAG------------CUGGGCCGGu -5'
12865 5' -60.4 NC_003387.1 + 42058 0.66 0.466744
Target:  5'- cGACCGCGGcgUGUaCGACCUGGCg- -3'
miRNA:   3'- cUUGGCGCUcaGCGaGCUGGGCCGgu -5'
12865 5' -60.4 NC_003387.1 + 30273 0.73 0.157237
Target:  5'- -uACCGCGAGgccaaCGCcgCGGCCCGcGCCu -3'
miRNA:   3'- cuUGGCGCUCa----GCGa-GCUGGGC-CGGu -5'
12865 5' -60.4 NC_003387.1 + 4289 0.73 0.170206
Target:  5'- aGGCCGCGGGcgagcagCGCaccgCGACCCGGCa- -3'
miRNA:   3'- cUUGGCGCUCa------GCGa---GCUGGGCCGgu -5'
12865 5' -60.4 NC_003387.1 + 10505 0.71 0.209554
Target:  5'- aGAUCaGCGGGgCGCUCGGCUCGGCg- -3'
miRNA:   3'- cUUGG-CGCUCaGCGAGCUGGGCCGgu -5'
12865 5' -60.4 NC_003387.1 + 5131 0.71 0.214442
Target:  5'- -cGCCGCacgcgacGAGgggCGCUCGGCgCCGGUCGg -3'
miRNA:   3'- cuUGGCG-------CUCa--GCGAGCUG-GGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 47005 0.7 0.24401
Target:  5'- cGGGCCGCcuGGU-GCUCGacuucauuggcgGCCCGGCCGg -3'
miRNA:   3'- -CUUGGCGc-UCAgCGAGC------------UGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 6497 0.69 0.283045
Target:  5'- cGGGCCGCGAaggcaGUUGCgUCGGCCgGGUgGg -3'
miRNA:   3'- -CUUGGCGCU-----CAGCG-AGCUGGgCCGgU- -5'
12865 5' -60.4 NC_003387.1 + 33212 0.7 0.26951
Target:  5'- cAAgCGCGAGgccCGCUCGGCgaUGGCCGu -3'
miRNA:   3'- cUUgGCGCUCa--GCGAGCUGg-GCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 29996 0.71 0.231443
Target:  5'- cGACCGCGAGUaCGCcCGacuggucgguaucGCCCaGGCCGc -3'
miRNA:   3'- cUUGGCGCUCA-GCGaGC-------------UGGG-CCGGU- -5'
12865 5' -60.4 NC_003387.1 + 18545 0.74 0.133951
Target:  5'- uGugCGCGAGUCGUUCGAgCgcaaGGCCGa -3'
miRNA:   3'- cUugGCGCUCAGCGAGCUgGg---CCGGU- -5'
12865 5' -60.4 NC_003387.1 + 44705 0.7 0.26951
Target:  5'- -cGCCGCGucGGUgaCGUUCGuuaugccucGCCCGGCCGg -3'
miRNA:   3'- cuUGGCGC--UCA--GCGAGC---------UGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 27207 0.74 0.137598
Target:  5'- cAACCgGCGcaAGUCuGCggUCGACCCGGCCGa -3'
miRNA:   3'- cUUGG-CGC--UCAG-CG--AGCUGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 2166 0.71 0.214991
Target:  5'- uGAGCCGCGAG-CaGCUCGGCgCCuuGGUCGc -3'
miRNA:   3'- -CUUGGCGCUCaG-CGAGCUG-GG--CCGGU- -5'
12865 5' -60.4 NC_003387.1 + 27242 0.69 0.276211
Target:  5'- uGACaCGCGcGGUCGaggCGGCCCGGCa- -3'
miRNA:   3'- cUUG-GCGC-UCAGCga-GCUGGGCCGgu -5'
12865 5' -60.4 NC_003387.1 + 31734 0.69 0.304349
Target:  5'- -cGCagGCGAGUuaggggugucccUGCUCGACCUGGUCGc -3'
miRNA:   3'- cuUGg-CGCUCA------------GCGAGCUGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 7214 0.73 0.153117
Target:  5'- uGGCCGCGG--UGCU-GACCCGGCCGa -3'
miRNA:   3'- cUUGGCGCUcaGCGAgCUGGGCCGGU- -5'
12865 5' -60.4 NC_003387.1 + 36693 0.72 0.193952
Target:  5'- -cACCGCGGGcaaGCugaaucUCGACCCGGUCGa -3'
miRNA:   3'- cuUGGCGCUCag-CG------AGCUGGGCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.