miRNA display CGI


Results 21 - 40 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12870 5' -61.2 NC_003387.1 + 5447 0.67 0.340637
Target:  5'- gGGCGCCGACGG--CGGCcaaaGCGgugACCAg -3'
miRNA:   3'- -CCGCGGCUGCUagGCCGa---CGCg--UGGU- -5'
12870 5' -61.2 NC_003387.1 + 5626 0.67 0.35669
Target:  5'- aGGCGCuCGaACGcgCCGaGCaagccgagaaGCGCGCCGa -3'
miRNA:   3'- -CCGCG-GC-UGCuaGGC-CGa---------CGCGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 5826 0.71 0.203133
Target:  5'- cGUGCaCGACGAccUCgGGCUGCGCcgcaggugggggcGCCGc -3'
miRNA:   3'- cCGCG-GCUGCU--AGgCCGACGCG-------------UGGU- -5'
12870 5' -61.2 NC_003387.1 + 5834 0.67 0.355875
Target:  5'- aGGCGgCGGCGGccucaagUCCGG-UGC-CACCGg -3'
miRNA:   3'- -CCGCgGCUGCU-------AGGCCgACGcGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 6052 0.7 0.2312
Target:  5'- gGGCGCCGGgcaGGUUCGa--GCGCACCAu -3'
miRNA:   3'- -CCGCGGCUg--CUAGGCcgaCGCGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 6304 0.66 0.43526
Target:  5'- cGUGCUGAcCGAggucgCCGaGCUGgGCgGCCAg -3'
miRNA:   3'- cCGCGGCU-GCUa----GGC-CGACgCG-UGGU- -5'
12870 5' -61.2 NC_003387.1 + 6405 0.73 0.145047
Target:  5'- cGGCGCUGAU--UCCGGCcgcggugacUGCGgGCCAg -3'
miRNA:   3'- -CCGCGGCUGcuAGGCCG---------ACGCgUGGU- -5'
12870 5' -61.2 NC_003387.1 + 6537 0.67 0.340637
Target:  5'- cGCGCUGcagauacauGCGAgCCGGgacacgGCGCACCAa -3'
miRNA:   3'- cCGCGGC---------UGCUaGGCCga----CGCGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 6882 0.68 0.302825
Target:  5'- cGGuCGCCGuCGuggcaCCGGCUGCcuaguGCGCUAu -3'
miRNA:   3'- -CC-GCGGCuGCua---GGCCGACG-----CGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 7034 0.66 0.399097
Target:  5'- aGGCGCUGGCGAcaagccaggacgUCaaGCggGCGCugCGg -3'
miRNA:   3'- -CCGCGGCUGCU------------AGgcCGa-CGCGugGU- -5'
12870 5' -61.2 NC_003387.1 + 7164 0.72 0.169902
Target:  5'- cGUGCCGACGAgCUGGCgGCGgAUCGc -3'
miRNA:   3'- cCGCGGCUGCUaGGCCGaCGCgUGGU- -5'
12870 5' -61.2 NC_003387.1 + 7313 0.66 0.407957
Target:  5'- cGGgGCCGuACcugUCGGCUGCGC-UCAa -3'
miRNA:   3'- -CCgCGGC-UGcuaGGCCGACGCGuGGU- -5'
12870 5' -61.2 NC_003387.1 + 7468 0.67 0.364914
Target:  5'- uGgGCCaGGCGAUcaCCGaGCcGCGCACCc -3'
miRNA:   3'- cCgCGG-CUGCUA--GGC-CGaCGCGUGGu -5'
12870 5' -61.2 NC_003387.1 + 7625 0.72 0.16122
Target:  5'- cGGCGUCGACGAcCUGGCcGCcgaaCACCGg -3'
miRNA:   3'- -CCGCGGCUGCUaGGCCGaCGc---GUGGU- -5'
12870 5' -61.2 NC_003387.1 + 7817 0.66 0.426041
Target:  5'- cGGCGaCG-CGAUaCGGauaUGCGCGCCc -3'
miRNA:   3'- -CCGCgGCuGCUAgGCCg--ACGCGUGGu -5'
12870 5' -61.2 NC_003387.1 + 8293 0.7 0.219822
Target:  5'- gGGCGacgUGugGAUcaCCGGCgcgGCGCAUCAc -3'
miRNA:   3'- -CCGCg--GCugCUA--GGCCGa--CGCGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 9032 0.66 0.43526
Target:  5'- gGGCGCCGucgGCGAUCCacgccaGGaucGCGuCGCCc -3'
miRNA:   3'- -CCGCGGC---UGCUAGG------CCga-CGC-GUGGu -5'
12870 5' -61.2 NC_003387.1 + 9357 0.68 0.295661
Target:  5'- aGGaCGUCGACGAgCCGGUgGCG-GCCGa -3'
miRNA:   3'- -CC-GCGGCUGCUaGGCCGaCGCgUGGU- -5'
12870 5' -61.2 NC_003387.1 + 9422 0.69 0.284475
Target:  5'- uGgGCCGACGAguacgacgcgggcgCCGaGCUGUucuGCGCCAc -3'
miRNA:   3'- cCgCGGCUGCUa-------------GGC-CGACG---CGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 9482 0.67 0.348597
Target:  5'- cGGCGCCGAacaGGaaCGGCaacacguggUGCGuCACCu -3'
miRNA:   3'- -CCGCGGCUg--CUagGCCG---------ACGC-GUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.