miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12870 5' -61.2 NC_003387.1 + 11 0.66 0.390361
Target:  5'- gGGCGCCG-CGAUCguucGCgGgGCACCc -3'
miRNA:   3'- -CCGCGGCuGCUAGgc--CGaCgCGUGGu -5'
12870 5' -61.2 NC_003387.1 + 463 0.67 0.348597
Target:  5'- cGGCgGCCGACGGcgaCCGGC-GCGaGCUg -3'
miRNA:   3'- -CCG-CGGCUGCUa--GGCCGaCGCgUGGu -5'
12870 5' -61.2 NC_003387.1 + 722 0.74 0.117072
Target:  5'- aGgGCCGACaGGUCgGGCagGUGCGCCAg -3'
miRNA:   3'- cCgCGGCUG-CUAGgCCGa-CGCGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 726 0.67 0.340637
Target:  5'- cGUGUCGACGGcCUGGCcgucggUGCGCGCg- -3'
miRNA:   3'- cCGCGGCUGCUaGGCCG------ACGCGUGgu -5'
12870 5' -61.2 NC_003387.1 + 900 0.66 0.426041
Target:  5'- cGGCGCgcuCGuGUUCGcGCUGUGCAUCAa -3'
miRNA:   3'- -CCGCGgcuGC-UAGGC-CGACGCGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 993 0.73 0.141242
Target:  5'- aGGCGCCGAcCGGggUCGGaUGCGCugCGg -3'
miRNA:   3'- -CCGCGGCU-GCUa-GGCCgACGCGugGU- -5'
12870 5' -61.2 NC_003387.1 + 1262 0.75 0.096804
Target:  5'- cGGUGUCGguuGCGGUgCGGCUGCGCGgCGu -3'
miRNA:   3'- -CCGCGGC---UGCUAgGCCGACGCGUgGU- -5'
12870 5' -61.2 NC_003387.1 + 1386 0.67 0.348597
Target:  5'- uGGCGCaaGAUGaAUCCGaGCUaccCGCACCGg -3'
miRNA:   3'- -CCGCGg-CUGC-UAGGC-CGAc--GCGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 1538 0.67 0.332808
Target:  5'- cGGUGCCGAgGAUCgccaGGCguacGUGCauACCGg -3'
miRNA:   3'- -CCGCGGCUgCUAGg---CCGa---CGCG--UGGU- -5'
12870 5' -61.2 NC_003387.1 + 1628 0.66 0.38175
Target:  5'- gGGCaGCCu-CGcgCgGGUUGCGCGCUg -3'
miRNA:   3'- -CCG-CGGcuGCuaGgCCGACGCGUGGu -5'
12870 5' -61.2 NC_003387.1 + 1771 0.66 0.38175
Target:  5'- cGGCGCUGGCGc-CCGaGCUGaaaGC-CCGc -3'
miRNA:   3'- -CCGCGGCUGCuaGGC-CGACg--CGuGGU- -5'
12870 5' -61.2 NC_003387.1 + 2481 0.67 0.365743
Target:  5'- cGGCGCUGACGua-CGGCgccucguaugugacgGUGaCGCCGa -3'
miRNA:   3'- -CCGCGGCUGCuagGCCGa--------------CGC-GUGGU- -5'
12870 5' -61.2 NC_003387.1 + 3230 0.67 0.364914
Target:  5'- -aCGUCGACGc-CgGGCggGCGCACCGg -3'
miRNA:   3'- ccGCGGCUGCuaGgCCGa-CGCGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 3548 0.68 0.310121
Target:  5'- cGGcCGCCGccugcGCGA-CCGcCUGCGCGCUg -3'
miRNA:   3'- -CC-GCGGC-----UGCUaGGCcGACGCGUGGu -5'
12870 5' -61.2 NC_003387.1 + 3645 0.66 0.407957
Target:  5'- -uCGCCGuCGA-CCGGCUcGUGCcCCGg -3'
miRNA:   3'- ccGCGGCuGCUaGGCCGA-CGCGuGGU- -5'
12870 5' -61.2 NC_003387.1 + 3654 0.67 0.340637
Target:  5'- cGCGCCG-CGAgccugcCCGGUga-GCGCCAg -3'
miRNA:   3'- cCGCGGCuGCUa-----GGCCGacgCGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 3854 1.1 0.000223
Target:  5'- cGGCGCCGACGAUCCGGCUGCGCACCAg -3'
miRNA:   3'- -CCGCGGCUGCUAGGCCGACGCGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 3939 0.69 0.248575
Target:  5'- gGGCGCUGcugcagaACGAcCCGGUggucGCGCugCAa -3'
miRNA:   3'- -CCGCGGC-------UGCUaGGCCGa---CGCGugGU- -5'
12870 5' -61.2 NC_003387.1 + 3941 0.72 0.16551
Target:  5'- cGGCGaucagCGGCGAgCUGGCUGCGCcgagcACCGc -3'
miRNA:   3'- -CCGCg----GCUGCUaGGCCGACGCG-----UGGU- -5'
12870 5' -61.2 NC_003387.1 + 4505 0.67 0.348597
Target:  5'- aGGCcCCGcuCGA-CCGGCUGCuGCGCgAa -3'
miRNA:   3'- -CCGcGGCu-GCUaGGCCGACG-CGUGgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.