miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12870 5' -61.2 NC_003387.1 + 3854 1.1 0.000223
Target:  5'- cGGCGCCGACGAUCCGGCUGCGCACCAg -3'
miRNA:   3'- -CCGCGGCUGCUAGGCCGACGCGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 44880 0.84 0.020148
Target:  5'- gGGCGUCGGCGAuUCCGcCUGCGCGCCGg -3'
miRNA:   3'- -CCGCGGCUGCU-AGGCcGACGCGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 21229 0.78 0.05888
Target:  5'- gGGCGCagGGCGAUCCGGUcggcaugGUGCGCCGc -3'
miRNA:   3'- -CCGCGg-CUGCUAGGCCGa------CGCGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 23974 0.77 0.071526
Target:  5'- aGCGCCgGGCGG-CUGGUUGUGCACCGc -3'
miRNA:   3'- cCGCGG-CUGCUaGGCCGACGCGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 22344 0.77 0.073533
Target:  5'- cGGCGCCgGugGggCUGGCccagGCGCACCc -3'
miRNA:   3'- -CCGCGG-CugCuaGGCCGa---CGCGUGGu -5'
12870 5' -61.2 NC_003387.1 + 30395 0.76 0.086759
Target:  5'- cGGCGCCGGgagaguuaccUGAUCCGGC-GC-CACCAg -3'
miRNA:   3'- -CCGCGGCU----------GCUAGGCCGaCGcGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 24268 0.76 0.089173
Target:  5'- uGCGCCG-CGAUCugccgccgccuCGGCgUGCGCGCCGa -3'
miRNA:   3'- cCGCGGCuGCUAG-----------GCCG-ACGCGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 1262 0.75 0.096804
Target:  5'- cGGUGUCGguuGCGGUgCGGCUGCGCGgCGu -3'
miRNA:   3'- -CCGCGGC---UGCUAgGCCGACGCGUgGU- -5'
12870 5' -61.2 NC_003387.1 + 14748 0.74 0.110908
Target:  5'- aGGCGUCGACGAUCUGGUcguUGuCGUGCUc -3'
miRNA:   3'- -CCGCGGCUGCUAGGCCG---AC-GCGUGGu -5'
12870 5' -61.2 NC_003387.1 + 722 0.74 0.117072
Target:  5'- aGgGCCGACaGGUCgGGCagGUGCGCCAg -3'
miRNA:   3'- cCgCGGCUG-CUAGgCCGa-CGCGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 33770 0.74 0.126919
Target:  5'- cGGCGCCGcgaGCGGUuuggcCCGGCUG-GUGCCGa -3'
miRNA:   3'- -CCGCGGC---UGCUA-----GGCCGACgCGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 41708 0.73 0.137528
Target:  5'- cGGCGCCGACGAaggCGGCcgGgGCACg- -3'
miRNA:   3'- -CCGCGGCUGCUag-GCCGa-CgCGUGgu -5'
12870 5' -61.2 NC_003387.1 + 993 0.73 0.141242
Target:  5'- aGGCGCCGAcCGGggUCGGaUGCGCugCGg -3'
miRNA:   3'- -CCGCGGCU-GCUa-GGCCgACGCGugGU- -5'
12870 5' -61.2 NC_003387.1 + 6405 0.73 0.145047
Target:  5'- cGGCGCUGAU--UCCGGCcgcggugacUGCGgGCCAg -3'
miRNA:   3'- -CCGCGGCUGcuAGGCCG---------ACGCgUGGU- -5'
12870 5' -61.2 NC_003387.1 + 44429 0.73 0.151732
Target:  5'- cGCGCCGGUGAUCCacacgucgcccucgGGCgUGUGCACCu -3'
miRNA:   3'- cCGCGGCUGCUAGG--------------CCG-ACGCGUGGu -5'
12870 5' -61.2 NC_003387.1 + 14694 0.73 0.15294
Target:  5'- gGGCGCCGucgccGCGAUCCGuuGCgGUGCACg- -3'
miRNA:   3'- -CCGCGGC-----UGCUAGGC--CGaCGCGUGgu -5'
12870 5' -61.2 NC_003387.1 + 50245 0.73 0.15294
Target:  5'- aGGCGCCGuACGucagcgCCgGGCgGUGCACCu -3'
miRNA:   3'- -CCGCGGC-UGCua----GG-CCGaCGCGUGGu -5'
12870 5' -61.2 NC_003387.1 + 35544 0.73 0.15294
Target:  5'- cGCGCCGuCGccgCCcaGGCgGCGCACCAg -3'
miRNA:   3'- cCGCGGCuGCua-GG--CCGaCGCGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 22991 0.72 0.157031
Target:  5'- cGGCGCCGACGA--CGGCaagGCccGCAUCAc -3'
miRNA:   3'- -CCGCGGCUGCUagGCCGa--CG--CGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 7625 0.72 0.16122
Target:  5'- cGGCGUCGACGAcCUGGCcGCcgaaCACCGg -3'
miRNA:   3'- -CCGCGGCUGCUaGGCCGaCGc---GUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.