miRNA display CGI


Results 1 - 20 of 181 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12870 5' -61.2 NC_003387.1 + 21229 0.78 0.05888
Target:  5'- gGGCGCagGGCGAUCCGGUcggcaugGUGCGCCGc -3'
miRNA:   3'- -CCGCGg-CUGCUAGGCCGa------CGCGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 41114 0.7 0.214314
Target:  5'- uGGCGCUGcACGA-CCggaucaaguGGCaGCGCGCCGa -3'
miRNA:   3'- -CCGCGGC-UGCUaGG---------CCGaCGCGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 12279 0.7 0.219822
Target:  5'- uGGCGaCCGGCGG-CCGGaucaGCGgGCCGg -3'
miRNA:   3'- -CCGC-GGCUGCUaGGCCga--CGCgUGGU- -5'
12870 5' -61.2 NC_003387.1 + 6304 0.66 0.43526
Target:  5'- cGUGCUGAcCGAggucgCCGaGCUGgGCgGCCAg -3'
miRNA:   3'- cCGCGGCU-GCUa----GGC-CGACgCG-UGGU- -5'
12870 5' -61.2 NC_003387.1 + 41708 0.73 0.137528
Target:  5'- cGGCGCCGACGAaggCGGCcgGgGCACg- -3'
miRNA:   3'- -CCGCGGCUGCUag-GCCGa-CgCGUGgu -5'
12870 5' -61.2 NC_003387.1 + 6405 0.73 0.145047
Target:  5'- cGGCGCUGAU--UCCGGCcgcggugacUGCGgGCCAg -3'
miRNA:   3'- -CCGCGGCUGcuAGGCCG---------ACGCgUGGU- -5'
12870 5' -61.2 NC_003387.1 + 25191 0.72 0.16122
Target:  5'- cGGCGCCGcCGccgCGGCaGCGCAUCAu -3'
miRNA:   3'- -CCGCGGCuGCuagGCCGaCGCGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 48021 0.72 0.16122
Target:  5'- cGGCGCCGugGAU-CGGCacgUGCGgGCaCGg -3'
miRNA:   3'- -CCGCGGCugCUAgGCCG---ACGCgUG-GU- -5'
12870 5' -61.2 NC_003387.1 + 34517 0.72 0.174398
Target:  5'- cGGCGCCG-CGAUCCucgGGCUGCcCGUCGa -3'
miRNA:   3'- -CCGCGGCuGCUAGG---CCGACGcGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 28889 0.71 0.203654
Target:  5'- cGGCGCCGA--GUcCCGGCgcgGCGC-CCu -3'
miRNA:   3'- -CCGCGGCUgcUA-GGCCGa--CGCGuGGu -5'
12870 5' -61.2 NC_003387.1 + 46102 0.71 0.193456
Target:  5'- cGGcCGCCGACauguUCCGGCUGCuGCGgUg -3'
miRNA:   3'- -CC-GCGGCUGcu--AGGCCGACG-CGUgGu -5'
12870 5' -61.2 NC_003387.1 + 40501 0.72 0.174398
Target:  5'- uGCGCUGGCGAccgCCGGUgGCccgGCACCGa -3'
miRNA:   3'- cCGCGGCUGCUa--GGCCGaCG---CGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 22344 0.77 0.073533
Target:  5'- cGGCGCCgGugGggCUGGCccagGCGCACCc -3'
miRNA:   3'- -CCGCGG-CugCuaGGCCGa---CGCGUGGu -5'
12870 5' -61.2 NC_003387.1 + 23888 0.71 0.198498
Target:  5'- uGGCugGCCGACGu----GCUGCGCGCCGa -3'
miRNA:   3'- -CCG--CGGCUGCuaggcCGACGCGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 24268 0.76 0.089173
Target:  5'- uGCGCCG-CGAUCugccgccgccuCGGCgUGCGCGCCGa -3'
miRNA:   3'- cCGCGGCuGCUAG-----------GCCG-ACGCGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 38531 0.72 0.169902
Target:  5'- aGCGCCGACGGcgUCaugguGGCgcagagcaaGCGCACCAu -3'
miRNA:   3'- cCGCGGCUGCU--AGg----CCGa--------CGCGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 18182 0.71 0.203654
Target:  5'- -cCGCUGACGAU-CGGCUGCgagguGCGCCu -3'
miRNA:   3'- ccGCGGCUGCUAgGCCGACG-----CGUGGu -5'
12870 5' -61.2 NC_003387.1 + 8293 0.7 0.219822
Target:  5'- gGGCGacgUGugGAUcaCCGGCgcgGCGCAUCAc -3'
miRNA:   3'- -CCGCg--GCugCUA--GGCCGa--CGCGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 33770 0.74 0.126919
Target:  5'- cGGCGCCGcgaGCGGUuuggcCCGGCUG-GUGCCGa -3'
miRNA:   3'- -CCGCGGC---UGCUA-----GGCCGACgCGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 22991 0.72 0.157031
Target:  5'- cGGCGCCGACGA--CGGCaagGCccGCAUCAc -3'
miRNA:   3'- -CCGCGGCUGCUagGCCGa--CG--CGUGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.