Results 1 - 20 of 181 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12870 | 5' | -61.2 | NC_003387.1 | + | 6304 | 0.66 | 0.43526 |
Target: 5'- cGUGCUGAcCGAggucgCCGaGCUGgGCgGCCAg -3' miRNA: 3'- cCGCGGCU-GCUa----GGC-CGACgCG-UGGU- -5' |
|||||||
12870 | 5' | -61.2 | NC_003387.1 | + | 31250 | 0.66 | 0.398217 |
Target: 5'- cGGC-CCGACcgGcgCgGGCUGCGCcagcgggGCCGg -3' miRNA: 3'- -CCGcGGCUG--CuaGgCCGACGCG-------UGGU- -5' |
|||||||
12870 | 5' | -61.2 | NC_003387.1 | + | 22246 | 0.66 | 0.390361 |
Target: 5'- cGGCGCCGACGGgaagcacUUGGUgcacagcaGgGCGCCGu -3' miRNA: 3'- -CCGCGGCUGCUa------GGCCGa-------CgCGUGGU- -5' |
|||||||
12870 | 5' | -61.2 | NC_003387.1 | + | 14922 | 0.66 | 0.390361 |
Target: 5'- cGCGCUGcuGCGA-CCGcggguGCUGCGC-CCAg -3' miRNA: 3'- cCGCGGC--UGCUaGGC-----CGACGCGuGGU- -5' |
|||||||
12870 | 5' | -61.2 | NC_003387.1 | + | 31959 | 0.66 | 0.390361 |
Target: 5'- aGgGCCGACGcgCCuuGCagGCGCAUCGa -3' miRNA: 3'- cCgCGGCUGCuaGGc-CGa-CGCGUGGU- -5' |
|||||||
12870 | 5' | -61.2 | NC_003387.1 | + | 31051 | 0.66 | 0.390361 |
Target: 5'- gGGCGUCGGCGAacacgugCuCGGCcGC-CGCCGc -3' miRNA: 3'- -CCGCGGCUGCUa------G-GCCGaCGcGUGGU- -5' |
|||||||
12870 | 5' | -61.2 | NC_003387.1 | + | 11 | 0.66 | 0.390361 |
Target: 5'- gGGCGCCG-CGAUCguucGCgGgGCACCc -3' miRNA: 3'- -CCGCGGCuGCUAGgc--CGaCgCGUGGu -5' |
|||||||
12870 | 5' | -61.2 | NC_003387.1 | + | 26810 | 0.66 | 0.38175 |
Target: 5'- cGCGCUGGUGGU-CGGUgaGCGCGCCGc -3' miRNA: 3'- cCGCGGCUGCUAgGCCGa-CGCGUGGU- -5' |
|||||||
12870 | 5' | -61.2 | NC_003387.1 | + | 9911 | 0.66 | 0.38175 |
Target: 5'- cGcCGCCGuCGGggcUCGGCUGC-CACCGc -3' miRNA: 3'- cC-GCGGCuGCUa--GGCCGACGcGUGGU- -5' |
|||||||
12870 | 5' | -61.2 | NC_003387.1 | + | 37795 | 0.66 | 0.407957 |
Target: 5'- uGCGCCGcUGcgCCGGUagccGCGCAgCCGu -3' miRNA: 3'- cCGCGGCuGCuaGGCCGa---CGCGU-GGU- -5' |
|||||||
12870 | 5' | -61.2 | NC_003387.1 | + | 39065 | 0.66 | 0.407957 |
Target: 5'- cGGCGCCcucGGCGA-CCGaGCcGC-CGCCGa -3' miRNA: 3'- -CCGCGG---CUGCUaGGC-CGaCGcGUGGU- -5' |
|||||||
12870 | 5' | -61.2 | NC_003387.1 | + | 10341 | 0.66 | 0.411536 |
Target: 5'- aGGCaGCCGuugcgcagcccgcacAUGAUCCgcacGGcCUGCGuCACCAg -3' miRNA: 3'- -CCG-CGGC---------------UGCUAGG----CC-GACGC-GUGGU- -5' |
|||||||
12870 | 5' | -61.2 | NC_003387.1 | + | 25212 | 0.66 | 0.43526 |
Target: 5'- cGCGgCGGCGG-CCGGaucuuCGCGCCAc -3' miRNA: 3'- cCGCgGCUGCUaGGCCgac--GCGUGGU- -5' |
|||||||
12870 | 5' | -61.2 | NC_003387.1 | + | 9032 | 0.66 | 0.43526 |
Target: 5'- gGGCGCCGucgGCGAUCCacgccaGGaucGCGuCGCCc -3' miRNA: 3'- -CCGCGGC---UGCUAGG------CCga-CGC-GUGGu -5' |
|||||||
12870 | 5' | -61.2 | NC_003387.1 | + | 17356 | 0.66 | 0.43526 |
Target: 5'- aGGCGaCGGCGAUCaGGUgcgGCGaGCCu -3' miRNA: 3'- -CCGCgGCUGCUAGgCCGa--CGCgUGGu -5' |
|||||||
12870 | 5' | -61.2 | NC_003387.1 | + | 12364 | 0.66 | 0.426041 |
Target: 5'- uGGCcccgGCCG-CGAUCaCGGCcUGCuGCACg- -3' miRNA: 3'- -CCG----CGGCuGCUAG-GCCG-ACG-CGUGgu -5' |
|||||||
12870 | 5' | -61.2 | NC_003387.1 | + | 52604 | 0.66 | 0.426041 |
Target: 5'- gGGCGaCCGcauCGAggCgGGC-GCGCAUCAg -3' miRNA: 3'- -CCGC-GGCu--GCUa-GgCCGaCGCGUGGU- -5' |
|||||||
12870 | 5' | -61.2 | NC_003387.1 | + | 19948 | 0.66 | 0.426041 |
Target: 5'- cGGCGguacgCGGCGGg-UGGUUGCGCAUCGa -3' miRNA: 3'- -CCGCg----GCUGCUagGCCGACGCGUGGU- -5' |
|||||||
12870 | 5' | -61.2 | NC_003387.1 | + | 7817 | 0.66 | 0.426041 |
Target: 5'- cGGCGaCG-CGAUaCGGauaUGCGCGCCc -3' miRNA: 3'- -CCGCgGCuGCUAgGCCg--ACGCGUGGu -5' |
|||||||
12870 | 5' | -61.2 | NC_003387.1 | + | 32182 | 0.66 | 0.416939 |
Target: 5'- cGGCgcaGCCGACGAacaCCgcaggGGCagGCGCAUCGc -3' miRNA: 3'- -CCG---CGGCUGCUa--GG-----CCGa-CGCGUGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home