miRNA display CGI


Results 21 - 40 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12870 5' -61.2 NC_003387.1 + 37445 0.7 0.230619
Target:  5'- -cCGCCGACGGUugccaugCUGGCgGCGCugCGc -3'
miRNA:   3'- ccGCGGCUGCUA-------GGCCGaCGCGugGU- -5'
12870 5' -61.2 NC_003387.1 + 12279 0.7 0.219822
Target:  5'- uGGCGaCCGGCGG-CCGGaucaGCGgGCCGg -3'
miRNA:   3'- -CCGC-GGCUGCUaGGCCga--CGCgUGGU- -5'
12870 5' -61.2 NC_003387.1 + 40501 0.72 0.174398
Target:  5'- uGCGCUGGCGAccgCCGGUgGCccgGCACCGa -3'
miRNA:   3'- cCGCGGCUGCUa--GGCCGaCG---CGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 33770 0.74 0.126919
Target:  5'- cGGCGCCGcgaGCGGUuuggcCCGGCUG-GUGCCGa -3'
miRNA:   3'- -CCGCGGC---UGCUA-----GGCCGACgCGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 9422 0.69 0.284475
Target:  5'- uGgGCCGACGAguacgacgcgggcgCCGaGCUGUucuGCGCCAc -3'
miRNA:   3'- cCgCGGCUGCUa-------------GGC-CGACG---CGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 23246 0.69 0.248575
Target:  5'- cGGCGCCcuCGGgcaCUGGCUcuaugacgugcugGCGCACCGg -3'
miRNA:   3'- -CCGCGGcuGCUa--GGCCGA-------------CGCGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 41114 0.7 0.214314
Target:  5'- uGGCGCUGcACGA-CCggaucaaguGGCaGCGCGCCGa -3'
miRNA:   3'- -CCGCGGC-UGCUaGG---------CCGaCGCGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 24268 0.76 0.089173
Target:  5'- uGCGCCG-CGAUCugccgccgccuCGGCgUGCGCGCCGa -3'
miRNA:   3'- cCGCGGCuGCUAG-----------GCCG-ACGCGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 3939 0.69 0.248575
Target:  5'- gGGCGCUGcugcagaACGAcCCGGUggucGCGCugCAa -3'
miRNA:   3'- -CCGCGGC-------UGCUaGGCCGa---CGCGugGU- -5'
12870 5' -61.2 NC_003387.1 + 22344 0.77 0.073533
Target:  5'- cGGCGCCgGugGggCUGGCccagGCGCACCc -3'
miRNA:   3'- -CCGCGG-CugCuaGGCCGa---CGCGUGGu -5'
12870 5' -61.2 NC_003387.1 + 8293 0.7 0.219822
Target:  5'- gGGCGacgUGugGAUcaCCGGCgcgGCGCAUCAc -3'
miRNA:   3'- -CCGCg--GCugCUA--GGCCGa--CGCGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 37987 0.7 0.2312
Target:  5'- -uCGUCGACGc-CUGGCUGCGCgACCGc -3'
miRNA:   3'- ccGCGGCUGCuaGGCCGACGCG-UGGU- -5'
12870 5' -61.2 NC_003387.1 + 23888 0.71 0.198498
Target:  5'- uGGCugGCCGACGu----GCUGCGCGCCGa -3'
miRNA:   3'- -CCG--CGGCUGCuaggcCGACGCGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 34517 0.72 0.174398
Target:  5'- cGGCGCCG-CGAUCCucgGGCUGCcCGUCGa -3'
miRNA:   3'- -CCGCGGCuGCUAGG---CCGACGcGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 25191 0.72 0.16122
Target:  5'- cGGCGCCGcCGccgCGGCaGCGCAUCAu -3'
miRNA:   3'- -CCGCGGCuGCuagGCCGaCGCGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 41708 0.73 0.137528
Target:  5'- cGGCGCCGACGAaggCGGCcgGgGCACg- -3'
miRNA:   3'- -CCGCGGCUGCUag-GCCGa-CgCGUGgu -5'
12870 5' -61.2 NC_003387.1 + 43101 0.68 0.28863
Target:  5'- gGGCGCCGgguACGAgcgcgaCGGC-GCgGCGCCGc -3'
miRNA:   3'- -CCGCGGC---UGCUag----GCCGaCG-CGUGGU- -5'
12870 5' -61.2 NC_003387.1 + 45378 0.68 0.28863
Target:  5'- -uUGCCGGCGGUUa-GCUGCGC-CCGg -3'
miRNA:   3'- ccGCGGCUGCUAGgcCGACGCGuGGU- -5'
12870 5' -61.2 NC_003387.1 + 26045 0.69 0.274964
Target:  5'- cGGCGCCGcacauCGAguaCCacauucgcgaGGCUGCGC-CCGg -3'
miRNA:   3'- -CCGCGGCu----GCUa--GG----------CCGACGCGuGGU- -5'
12870 5' -61.2 NC_003387.1 + 33055 0.69 0.249193
Target:  5'- cGUGCCG-Ca--CCGGgUGCGCGCCAa -3'
miRNA:   3'- cCGCGGCuGcuaGGCCgACGCGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.