miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12872 5' -47.7 NC_003387.1 + 23611 0.66 0.988607
Target:  5'- gGGGUGUUGAuacccCAACAgcuUAGGCGCa -3'
miRNA:   3'- -CCCACAACUccacaGUUGU---GUUUGCG- -5'
12872 5' -47.7 NC_003387.1 + 11691 0.66 0.987614
Target:  5'- uGGGUGUcaaUGucGccGUCGACGCAgucgacccggccgucGACGCc -3'
miRNA:   3'- -CCCACA---ACucCa-CAGUUGUGU---------------UUGCG- -5'
12872 5' -47.7 NC_003387.1 + 45122 0.66 0.986736
Target:  5'- cGGUGUacGAGGUGacgcauuUCGAgGCGcGGCGCu -3'
miRNA:   3'- cCCACAa-CUCCAC-------AGUUgUGU-UUGCG- -5'
12872 5' -47.7 NC_003387.1 + 47204 0.66 0.985036
Target:  5'- aGGUGgccgccGGUGUCGGCAUuGugGUg -3'
miRNA:   3'- cCCACaacu--CCACAGUUGUGuUugCG- -5'
12872 5' -47.7 NC_003387.1 + 6838 0.66 0.985036
Target:  5'- -cGUGcUG-GGUGUgAGCGCGAcCGCu -3'
miRNA:   3'- ccCACaACuCCACAgUUGUGUUuGCG- -5'
12872 5' -47.7 NC_003387.1 + 38162 0.66 0.985036
Target:  5'- cGGcucGUcGAGGUuUCAGCaguACAAGCGCa -3'
miRNA:   3'- cCCa--CAaCUCCAcAGUUG---UGUUUGCG- -5'
12872 5' -47.7 NC_003387.1 + 26566 0.66 0.982959
Target:  5'- cGGGgGUUGAcuccucGGgGUCAggccGCGCGAGCGg -3'
miRNA:   3'- -CCCaCAACU------CCaCAGU----UGUGUUUGCg -5'
12872 5' -47.7 NC_003387.1 + 10477 0.66 0.980671
Target:  5'- aGGUGUc-GGGUuUCGACACAAccuCGCc -3'
miRNA:   3'- cCCACAacUCCAcAGUUGUGUUu--GCG- -5'
12872 5' -47.7 NC_003387.1 + 24141 0.67 0.975419
Target:  5'- cGGUGUugagcuUGAGGgcgucGUCGACgGCGAuCGCc -3'
miRNA:   3'- cCCACA------ACUCCa----CAGUUG-UGUUuGCG- -5'
12872 5' -47.7 NC_003387.1 + 20245 0.67 0.972432
Target:  5'- cGGcGcc-GGG-GUCGACGCAAACGCc -3'
miRNA:   3'- cCCaCaacUCCaCAGUUGUGUUUGCG- -5'
12872 5' -47.7 NC_003387.1 + 47338 0.67 0.972432
Target:  5'- -cGUGUUGAcagGUCAACACc-ACGCa -3'
miRNA:   3'- ccCACAACUccaCAGUUGUGuuUGCG- -5'
12872 5' -47.7 NC_003387.1 + 3618 0.68 0.948901
Target:  5'- cGGGUGcgcgucGAGGUGcUCGACuuCGuACGCc -3'
miRNA:   3'- -CCCACaa----CUCCAC-AGUUGu-GUuUGCG- -5'
12872 5' -47.7 NC_003387.1 + 50006 0.69 0.927392
Target:  5'- -aGUGUUGAGGUaUCAACAgCAcGACGg -3'
miRNA:   3'- ccCACAACUCCAcAGUUGU-GU-UUGCg -5'
12872 5' -47.7 NC_003387.1 + 39384 0.69 0.921255
Target:  5'- aGGUGUacGAGGUGcUCGuGCGCcuGGCGCg -3'
miRNA:   3'- cCCACAa-CUCCAC-AGU-UGUGu-UUGCG- -5'
12872 5' -47.7 NC_003387.1 + 37008 0.7 0.908069
Target:  5'- cGG-GUUGAGGU-UCAGCACAu-UGCu -3'
miRNA:   3'- cCCaCAACUCCAcAGUUGUGUuuGCG- -5'
12872 5' -47.7 NC_003387.1 + 19844 0.7 0.893683
Target:  5'- aGGUGUUGucGUcgagcuggcaGUCGGCGCAgucggcGACGCg -3'
miRNA:   3'- cCCACAACucCA----------CAGUUGUGU------UUGCG- -5'
12872 5' -47.7 NC_003387.1 + 20028 0.7 0.893683
Target:  5'- -uGUGUcaUGuGGGUGUCGACgACGuGCGCg -3'
miRNA:   3'- ccCACA--AC-UCCACAGUUG-UGUuUGCG- -5'
12872 5' -47.7 NC_003387.1 + 6332 0.72 0.79531
Target:  5'- --cUGUUGAGcUGUCAACACGcuGCGCc -3'
miRNA:   3'- cccACAACUCcACAGUUGUGUu-UGCG- -5'
12872 5' -47.7 NC_003387.1 + 22839 0.74 0.731166
Target:  5'- cGGGcUGUUGAcccGUCAACACGAaaGCGCc -3'
miRNA:   3'- -CCC-ACAACUccaCAGUUGUGUU--UGCG- -5'
12872 5' -47.7 NC_003387.1 + 5357 0.75 0.686039
Target:  5'- cGGUGUUGAGcUGUCAACAguUAAGCauGCg -3'
miRNA:   3'- cCCACAACUCcACAGUUGU--GUUUG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.