Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 12872 | 5' | -47.7 | NC_003387.1 | + | 2342 | 0.75 | 0.674582 |
|
Target: 5'- cGGUGUcGAGGccgccGUCGGCGuCGAGCGCc -3' miRNA: 3'- cCCACAaCUCCa----CAGUUGU-GUUUGCG- -5' |
|||||||
| 12872 | 5' | -47.7 | NC_003387.1 | + | 46936 | 0.77 | 0.525801 |
|
Target: 5'- cGGGcaccGAGGUGUCGAUccgcgGCGAGCGCg -3' miRNA: 3'- -CCCacaaCUCCACAGUUG-----UGUUUGCG- -5' |
|||||||
| 12872 | 5' | -47.7 | NC_003387.1 | + | 43526 | 0.79 | 0.430112 |
|
Target: 5'- gGGGUGccggucugUGAGGUGUCAGC-UAGACGg -3' miRNA: 3'- -CCCACa-------ACUCCACAGUUGuGUUUGCg -5' |
|||||||
| 12872 | 5' | -47.7 | NC_003387.1 | + | 5388 | 0.8 | 0.400538 |
|
Target: 5'- uGGUGUUGAccUGUCAACACGAaaACGCc -3' miRNA: 3'- cCCACAACUccACAGUUGUGUU--UGCG- -5' |
|||||||
| 12872 | 5' | -47.7 | NC_003387.1 | + | 2157 | 0.92 | 0.084285 |
|
Target: 5'- cGGccUGUUGAGGUGUCAACACAAAgCGCc -3' miRNA: 3'- cCC--ACAACUCCACAGUUGUGUUU-GCG- -5' |
|||||||
| 12872 | 5' | -47.7 | NC_003387.1 | + | 2748 | 1.15 | 0.002772 |
|
Target: 5'- gGGGUGUUGAGGUGUCAACACAAACGCc -3' miRNA: 3'- -CCCACAACUCCACAGUUGUGUUUGCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home