Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12872 | 5' | -47.7 | NC_003387.1 | + | 37008 | 0.7 | 0.908069 |
Target: 5'- cGG-GUUGAGGU-UCAGCACAu-UGCu -3' miRNA: 3'- cCCaCAACUCCAcAGUUGUGUuuGCG- -5' |
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12872 | 5' | -47.7 | NC_003387.1 | + | 19844 | 0.7 | 0.893683 |
Target: 5'- aGGUGUUGucGUcgagcuggcaGUCGGCGCAgucggcGACGCg -3' miRNA: 3'- cCCACAACucCA----------CAGUUGUGU------UUGCG- -5' |
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12872 | 5' | -47.7 | NC_003387.1 | + | 6332 | 0.72 | 0.79531 |
Target: 5'- --cUGUUGAGcUGUCAACACGcuGCGCc -3' miRNA: 3'- cccACAACUCcACAGUUGUGUu-UGCG- -5' |
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12872 | 5' | -47.7 | NC_003387.1 | + | 20028 | 0.7 | 0.893683 |
Target: 5'- -uGUGUcaUGuGGGUGUCGACgACGuGCGCg -3' miRNA: 3'- ccCACA--AC-UCCACAGUUG-UGUuUGCG- -5' |
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12872 | 5' | -47.7 | NC_003387.1 | + | 22839 | 0.74 | 0.731166 |
Target: 5'- cGGGcUGUUGAcccGUCAACACGAaaGCGCc -3' miRNA: 3'- -CCC-ACAACUccaCAGUUGUGUU--UGCG- -5' |
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12872 | 5' | -47.7 | NC_003387.1 | + | 23611 | 0.66 | 0.988607 |
Target: 5'- gGGGUGUUGAuacccCAACAgcuUAGGCGCa -3' miRNA: 3'- -CCCACAACUccacaGUUGU---GUUUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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