Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12872 | 5' | -47.7 | NC_003387.1 | + | 38162 | 0.66 | 0.985036 |
Target: 5'- cGGcucGUcGAGGUuUCAGCaguACAAGCGCa -3' miRNA: 3'- cCCa--CAaCUCCAcAGUUG---UGUUUGCG- -5' |
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12872 | 5' | -47.7 | NC_003387.1 | + | 47204 | 0.66 | 0.985036 |
Target: 5'- aGGUGgccgccGGUGUCGGCAUuGugGUg -3' miRNA: 3'- cCCACaacu--CCACAGUUGUGuUugCG- -5' |
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12872 | 5' | -47.7 | NC_003387.1 | + | 6838 | 0.66 | 0.985036 |
Target: 5'- -cGUGcUG-GGUGUgAGCGCGAcCGCu -3' miRNA: 3'- ccCACaACuCCACAgUUGUGUUuGCG- -5' |
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12872 | 5' | -47.7 | NC_003387.1 | + | 45122 | 0.66 | 0.986736 |
Target: 5'- cGGUGUacGAGGUGacgcauuUCGAgGCGcGGCGCu -3' miRNA: 3'- cCCACAa-CUCCAC-------AGUUgUGU-UUGCG- -5' |
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12872 | 5' | -47.7 | NC_003387.1 | + | 11691 | 0.66 | 0.987614 |
Target: 5'- uGGGUGUcaaUGucGccGUCGACGCAgucgacccggccgucGACGCc -3' miRNA: 3'- -CCCACA---ACucCa-CAGUUGUGU---------------UUGCG- -5' |
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12872 | 5' | -47.7 | NC_003387.1 | + | 23611 | 0.66 | 0.988607 |
Target: 5'- gGGGUGUUGAuacccCAACAgcuUAGGCGCa -3' miRNA: 3'- -CCCACAACUccacaGUUGU---GUUUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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