miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12873 5' -61.5 NC_003387.1 + 52062 0.66 0.399097
Target:  5'- gGGCU-GGGGGaGCacaUCGUGCagGCCc -3'
miRNA:   3'- -CCGAgUCCCCaCGg--AGCACGagCGGc -5'
12873 5' -61.5 NC_003387.1 + 1446 0.67 0.31755
Target:  5'- gGGCUC-GGGGU-CgUCGUcCUCGUCGa -3'
miRNA:   3'- -CCGAGuCCCCAcGgAGCAcGAGCGGC- -5'
12873 5' -61.5 NC_003387.1 + 15543 0.68 0.295661
Target:  5'- cGCUC-GGGGUGCCgg--GC-CGCCa -3'
miRNA:   3'- cCGAGuCCCCACGGagcaCGaGCGGc -5'
12873 5' -61.5 NC_003387.1 + 50550 0.68 0.292833
Target:  5'- uGGCUCGGGGGgcGCUUUGUGUUgacaccucaacagGCCGc -3'
miRNA:   3'- -CCGAGUCCCCa-CGGAGCACGAg------------CGGC- -5'
12873 5' -61.5 NC_003387.1 + 23818 0.68 0.274964
Target:  5'- gGGCUCGGGcGGUgGCC-CG-GCgcccgCGCCu -3'
miRNA:   3'- -CCGAGUCC-CCA-CGGaGCaCGa----GCGGc -5'
12873 5' -61.5 NC_003387.1 + 32838 0.69 0.26182
Target:  5'- uGGCUCAGGcccagcacGGUGUCUUGcaggGCgcccagCGCCGc -3'
miRNA:   3'- -CCGAGUCC--------CCACGGAGCa---CGa-----GCGGC- -5'
12873 5' -61.5 NC_003387.1 + 31737 0.69 0.26182
Target:  5'- aGGCgagUUAGGGGUGUcccugCUCGaccUGgUCGCCGa -3'
miRNA:   3'- -CCG---AGUCCCCACG-----GAGC---ACgAGCGGC- -5'
12873 5' -61.5 NC_003387.1 + 27945 0.7 0.2312
Target:  5'- gGGCUCGgucGGGGcGCUcggCGUGCUCggcuugGCCGg -3'
miRNA:   3'- -CCGAGU---CCCCaCGGa--GCACGAG------CGGC- -5'
12873 5' -61.5 NC_003387.1 + 23745 0.7 0.2312
Target:  5'- aGCUUAGcGGGUGCgCUCGaGUuuUUGCCGg -3'
miRNA:   3'- cCGAGUC-CCCACG-GAGCaCG--AGCGGC- -5'
12873 5' -61.5 NC_003387.1 + 3868 0.7 0.214314
Target:  5'- cGGCUgcgcacCAGGGcGUGCacgcCGUGCgucgCGCCGa -3'
miRNA:   3'- -CCGA------GUCCC-CACGga--GCACGa---GCGGC- -5'
12873 5' -61.5 NC_003387.1 + 10818 0.72 0.171688
Target:  5'- gGGCUCGGGcaaggcgaugacguuGGaGCUUCGccaGCUCGCCGa -3'
miRNA:   3'- -CCGAGUCC---------------CCaCGGAGCa--CGAGCGGC- -5'
12873 5' -61.5 NC_003387.1 + 14886 0.74 0.117072
Target:  5'- gGGCgCAGGGGUGCC-CGacCUCGCuCGg -3'
miRNA:   3'- -CCGaGUCCCCACGGaGCacGAGCG-GC- -5'
12873 5' -61.5 NC_003387.1 + 21621 0.74 0.110908
Target:  5'- cGCUCGGGGGUGCgUCGUGaUCggauucaaaacaGCCGc -3'
miRNA:   3'- cCGAGUCCCCACGgAGCACgAG------------CGGC- -5'
12873 5' -61.5 NC_003387.1 + 13431 0.75 0.097867
Target:  5'- cGGC-CGGGGGcuUGCCgUCGUcgagcagcuugcccaGCUCGCCGa -3'
miRNA:   3'- -CCGaGUCCCC--ACGG-AGCA---------------CGAGCGGC- -5'
12873 5' -61.5 NC_003387.1 + 44665 0.75 0.096804
Target:  5'- uGGCcgAGGGGcUGCCg-GUGCUCGCCa -3'
miRNA:   3'- -CCGagUCCCC-ACGGagCACGAGCGGc -5'
12873 5' -61.5 NC_003387.1 + 1763 0.75 0.091651
Target:  5'- cGGCUCGGGGGcGCUUCGcGCUgGCg- -3'
miRNA:   3'- -CCGAGUCCCCaCGGAGCaCGAgCGgc -5'
12873 5' -61.5 NC_003387.1 + 3413 0.76 0.079885
Target:  5'- uGCUCGGGGccGUGCCcucggCGUGCUCGgCGa -3'
miRNA:   3'- cCGAGUCCC--CACGGa----GCACGAGCgGC- -5'
12873 5' -61.5 NC_003387.1 + 12910 0.76 0.077711
Target:  5'- cGGCgUGGGGGUGCCUagUGgugGCUCGUCGg -3'
miRNA:   3'- -CCGaGUCCCCACGGA--GCa--CGAGCGGC- -5'
12873 5' -61.5 NC_003387.1 + 43346 0.77 0.073533
Target:  5'- cGcCUCGGGGGUcGCCUCGgccgccaccgGCUCGUCGa -3'
miRNA:   3'- cC-GAGUCCCCA-CGGAGCa---------CGAGCGGC- -5'
12873 5' -61.5 NC_003387.1 + 2201 1.1 0.000193
Target:  5'- gGGCUCAGGGGUGCCUCGUGCUCGCCGg -3'
miRNA:   3'- -CCGAGUCCCCACGGAGCACGAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.