miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12875 5' -54 NC_003387.1 + 11278 0.66 0.795433
Target:  5'- gCGACUCGAUCaaGGC-UCUUGCGaccgGCg -3'
miRNA:   3'- -GCUGGGUUAGc-UCGcAGAACGCga--CG- -5'
12875 5' -54 NC_003387.1 + 12009 0.66 0.795433
Target:  5'- gCGGCCUggUCGAcacgGCG-CaUGCGgUGUg -3'
miRNA:   3'- -GCUGGGuuAGCU----CGCaGaACGCgACG- -5'
12875 5' -54 NC_003387.1 + 40164 0.66 0.785548
Target:  5'- gCGGCCCGAUCGu-CGUCgaGCcCUcGCa -3'
miRNA:   3'- -GCUGGGUUAGCucGCAGaaCGcGA-CG- -5'
12875 5' -54 NC_003387.1 + 475 0.66 0.785548
Target:  5'- gCGACCgGcgCGAGCugcucGUCgcgaUGCGCgcccGCg -3'
miRNA:   3'- -GCUGGgUuaGCUCG-----CAGa---ACGCGa---CG- -5'
12875 5' -54 NC_003387.1 + 13320 0.66 0.7755
Target:  5'- uCGACCCAcUCGcGCGcCagGCGCacgaGCa -3'
miRNA:   3'- -GCUGGGUuAGCuCGCaGaaCGCGa---CG- -5'
12875 5' -54 NC_003387.1 + 49028 0.66 0.7755
Target:  5'- uCGACCUGAgcaucaccggcUCGA-CGg-UUGCGCUGCu -3'
miRNA:   3'- -GCUGGGUU-----------AGCUcGCagAACGCGACG- -5'
12875 5' -54 NC_003387.1 + 4569 0.66 0.7755
Target:  5'- gCGACCgcg-CGGGCcUCgguggcGCGCUGCg -3'
miRNA:   3'- -GCUGGguuaGCUCGcAGaa----CGCGACG- -5'
12875 5' -54 NC_003387.1 + 38830 0.66 0.7755
Target:  5'- -cACCCGacGUCGAaccugcccgGCGgcaUUGCGUUGCg -3'
miRNA:   3'- gcUGGGU--UAGCU---------CGCag-AACGCGACG- -5'
12875 5' -54 NC_003387.1 + 42729 0.66 0.754964
Target:  5'- cCGACCUGcucGUCaGGGCGUgCUcggaucggcUGCGCUGg -3'
miRNA:   3'- -GCUGGGU---UAG-CUCGCA-GA---------ACGCGACg -5'
12875 5' -54 NC_003387.1 + 17468 0.66 0.754964
Target:  5'- gCGGCgCCAGUUGucgucGGCGUaCUUGCGg-GCg -3'
miRNA:   3'- -GCUG-GGUUAGC-----UCGCA-GAACGCgaCG- -5'
12875 5' -54 NC_003387.1 + 45282 0.67 0.744499
Target:  5'- cCGACCCcGUCGGGCGg---GCauCUGUg -3'
miRNA:   3'- -GCUGGGuUAGCUCGCagaaCGc-GACG- -5'
12875 5' -54 NC_003387.1 + 50782 0.67 0.744499
Target:  5'- aGACCCg--CGGcCGgaUCaUGCGCUGCa -3'
miRNA:   3'- gCUGGGuuaGCUcGC--AGaACGCGACG- -5'
12875 5' -54 NC_003387.1 + 27096 0.67 0.744499
Target:  5'- uCGugCCAccaGUCGGGCGUauucacgagGCaCUGCg -3'
miRNA:   3'- -GCugGGU---UAGCUCGCAgaa------CGcGACG- -5'
12875 5' -54 NC_003387.1 + 49497 0.67 0.733918
Target:  5'- uGACucgCCGAaacuuucacgcuUCGcGGCGagCUUGCGCUGCu -3'
miRNA:   3'- gCUG---GGUU------------AGC-UCGCa-GAACGCGACG- -5'
12875 5' -54 NC_003387.1 + 21238 0.67 0.723233
Target:  5'- gCGAUCCGGUCG-GCauggUGCGCcGCg -3'
miRNA:   3'- -GCUGGGUUAGCuCGcagaACGCGaCG- -5'
12875 5' -54 NC_003387.1 + 36713 0.67 0.723233
Target:  5'- uCGACCCGGUCGAGCugcccggccUCgacGcCGuCUGCg -3'
miRNA:   3'- -GCUGGGUUAGCUCGc--------AGaa-C-GC-GACG- -5'
12875 5' -54 NC_003387.1 + 38625 0.67 0.723233
Target:  5'- uCGGCCCGca-GGccGCG-CUgGCGCUGCa -3'
miRNA:   3'- -GCUGGGUuagCU--CGCaGAaCGCGACG- -5'
12875 5' -54 NC_003387.1 + 24583 0.67 0.712456
Target:  5'- gGGCUCGAUCGuggGGCG-CUUGCGg-GCc -3'
miRNA:   3'- gCUGGGUUAGC---UCGCaGAACGCgaCG- -5'
12875 5' -54 NC_003387.1 + 46758 0.67 0.712456
Target:  5'- uGGCCgGGUCGAGCGaCUcGCGguucgGCg -3'
miRNA:   3'- gCUGGgUUAGCUCGCaGAaCGCga---CG- -5'
12875 5' -54 NC_003387.1 + 41076 0.67 0.702687
Target:  5'- uCGACgCGAUCGAgggGCGaucgugagccgcgagCUgcugGCGCUGCa -3'
miRNA:   3'- -GCUGgGUUAGCU---CGCa--------------GAa---CGCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.