miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1288 5' -51 NC_001317.1 + 1038 0.66 0.785875
Target:  5'- -uGCCAGCCcGGAgAAgcUGACcggcgGCUCGUa -3'
miRNA:   3'- ucUGGUCGGuCCUgUU--AUUG-----UGAGCG- -5'
1288 5' -51 NC_001317.1 + 28230 0.66 0.784808
Target:  5'- uGACCcugaaacAGCCAGGGCGcucaGUGuugaAUUCGCc -3'
miRNA:   3'- uCUGG-------UCGGUCCUGU----UAUug--UGAGCG- -5'
1288 5' -51 NC_001317.1 + 834 0.66 0.7631
Target:  5'- uGGCCGGUgAGGcCAGUAGCuugauuaGCUgGCc -3'
miRNA:   3'- uCUGGUCGgUCCuGUUAUUG-------UGAgCG- -5'
1288 5' -51 NC_001317.1 + 23529 0.66 0.753121
Target:  5'- cGGCCAGCUucGcCAuguuGUGACGCUgCGCa -3'
miRNA:   3'- uCUGGUCGGucCuGU----UAUUGUGA-GCG- -5'
1288 5' -51 NC_001317.1 + 8887 0.67 0.741896
Target:  5'- -cGCCAGUCGGGAauCGGUGugGC-CGUu -3'
miRNA:   3'- ucUGGUCGGUCCU--GUUAUugUGaGCG- -5'
1288 5' -51 NC_001317.1 + 22384 0.67 0.730542
Target:  5'- -cGCCAGCCGgauuuuuacGGACGGUcauuaguuAAC-CUCGCu -3'
miRNA:   3'- ucUGGUCGGU---------CCUGUUA--------UUGuGAGCG- -5'
1288 5' -51 NC_001317.1 + 5730 0.67 0.719073
Target:  5'- aGGuuuuCCAGCguGGuCAcgAACAC-CGCg -3'
miRNA:   3'- -UCu---GGUCGguCCuGUuaUUGUGaGCG- -5'
1288 5' -51 NC_001317.1 + 25290 0.67 0.712143
Target:  5'- cGGCgAGCCAGGGCGAUuuaaagguuauaaauGGCACa--- -3'
miRNA:   3'- uCUGgUCGGUCCUGUUA---------------UUGUGagcg -5'
1288 5' -51 NC_001317.1 + 5286 0.67 0.704016
Target:  5'- cGGCCAugaugaaauccaguGCCugacgcuGGACAAUGGCG-UCGCg -3'
miRNA:   3'- uCUGGU--------------CGGu------CCUGUUAUUGUgAGCG- -5'
1288 5' -51 NC_001317.1 + 12774 0.67 0.695849
Target:  5'- -uACC-GCuCAGGACGcgAGCACagCGCa -3'
miRNA:   3'- ucUGGuCG-GUCCUGUuaUUGUGa-GCG- -5'
1288 5' -51 NC_001317.1 + 2837 0.68 0.672337
Target:  5'- cAGACCAGaaGGGAUAA--GCGCcgUGCg -3'
miRNA:   3'- -UCUGGUCggUCCUGUUauUGUGa-GCG- -5'
1288 5' -51 NC_001317.1 + 7886 0.68 0.672337
Target:  5'- -uGCCaucaaGGCCAGuGACAAUGACG-UCGUa -3'
miRNA:   3'- ucUGG-----UCGGUC-CUGUUAUUGUgAGCG- -5'
1288 5' -51 NC_001317.1 + 14382 0.68 0.672337
Target:  5'- -uACCGGCUuucGCAAUGGCGCUCuGCa -3'
miRNA:   3'- ucUGGUCGGuccUGUUAUUGUGAG-CG- -5'
1288 5' -51 NC_001317.1 + 14661 0.68 0.648649
Target:  5'- aAGACCAuuuCCGaGGCGAUGGCAUaUCGCg -3'
miRNA:   3'- -UCUGGUc--GGUcCUGUUAUUGUG-AGCG- -5'
1288 5' -51 NC_001317.1 + 27513 0.68 0.636772
Target:  5'- -cGCCAGUCGGuGACGcaGUuuuUACUCGCg -3'
miRNA:   3'- ucUGGUCGGUC-CUGU--UAuu-GUGAGCG- -5'
1288 5' -51 NC_001317.1 + 20203 0.71 0.485965
Target:  5'- uGGCCGGUgAGGcCGAUAACguGCUgGCg -3'
miRNA:   3'- uCUGGUCGgUCCuGUUAUUG--UGAgCG- -5'
1288 5' -51 NC_001317.1 + 22560 0.74 0.319058
Target:  5'- cGACUAGCCAuaagccgucaGACAAUGAUGCUUGCu -3'
miRNA:   3'- uCUGGUCGGUc---------CUGUUAUUGUGAGCG- -5'
1288 5' -51 NC_001317.1 + 10820 0.76 0.26472
Target:  5'- aAGACCAG-CAGGAagcuguagcccgGACGCUCGCa -3'
miRNA:   3'- -UCUGGUCgGUCCUguua--------UUGUGAGCG- -5'
1288 5' -51 NC_001317.1 + 14119 1.12 0.000804
Target:  5'- aAGACCAGCCAGGACAAUAACACUCGCc -3'
miRNA:   3'- -UCUGGUCGGUCCUGUUAUUGUGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.