miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12880 5' -63.2 NC_003387.1 + 37337 0.65 0.354911
Target:  5'- aCGAgccccCGCCGcGGGCugcgcuaucugcggCACCugucggGCGGCGGCGc -3'
miRNA:   3'- -GCUa----GUGGC-CCCG--------------GUGG------CGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 3985 0.66 0.349332
Target:  5'- aCGuUC-CCaGGauugaGGCgGCCGUGGCGGCGa -3'
miRNA:   3'- -GCuAGuGG-CC-----CCGgUGGCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 21687 0.66 0.349332
Target:  5'- cCGA-CGCCcuGGCCGCCuCGGCgAGCGc -3'
miRNA:   3'- -GCUaGUGGccCCGGUGGcGCCG-UCGC- -5'
12880 5' -63.2 NC_003387.1 + 10505 0.66 0.349332
Target:  5'- aGAUCAgCGGGG-CGCU-CGGCucGGCGa -3'
miRNA:   3'- gCUAGUgGCCCCgGUGGcGCCG--UCGC- -5'
12880 5' -63.2 NC_003387.1 + 1000 0.66 0.349332
Target:  5'- ----gACCGGGGUCggaugcGCUGCGGCcuuGCGu -3'
miRNA:   3'- gcuagUGGCCCCGG------UGGCGCCGu--CGC- -5'
12880 5' -63.2 NC_003387.1 + 21683 0.66 0.349332
Target:  5'- uCGG-CGCCGGugccgugcuGGCCGCCGCccCGGCGc -3'
miRNA:   3'- -GCUaGUGGCC---------CCGGUGGCGccGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 18216 0.66 0.349332
Target:  5'- gGAUCG-CGGcGCCGCaGCGGCGGgCGu -3'
miRNA:   3'- gCUAGUgGCCcCGGUGgCGCCGUC-GC- -5'
12880 5' -63.2 NC_003387.1 + 47946 0.66 0.34854
Target:  5'- aCGA-CGCCGuguGGGCCgcgaagcACCGCGaGCugGGCGg -3'
miRNA:   3'- -GCUaGUGGC---CCCGG-------UGGCGC-CG--UCGC- -5'
12880 5' -63.2 NC_003387.1 + 42867 0.66 0.341471
Target:  5'- gGAaCACCGcGGuGCC-CgGCGGCgaGGCGa -3'
miRNA:   3'- gCUaGUGGC-CC-CGGuGgCGCCG--UCGC- -5'
12880 5' -63.2 NC_003387.1 + 14080 0.66 0.341471
Target:  5'- uGAUgCGCCGGaacugcagcGCCAgCGCGGCcuGCGg -3'
miRNA:   3'- gCUA-GUGGCCc--------CGGUgGCGCCGu-CGC- -5'
12880 5' -63.2 NC_003387.1 + 45059 0.66 0.340691
Target:  5'- aGGUCGCCGagcgcgucgaGGGCCguccuggGCCGguguuCGGCGGCc -3'
miRNA:   3'- gCUAGUGGC----------CCCGG-------UGGC-----GCCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 28430 0.66 0.333738
Target:  5'- uGAUCACgugauCGGcGcGCaCGCCGaGGCGGCGg -3'
miRNA:   3'- gCUAGUG-----GCC-C-CG-GUGGCgCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 39313 0.66 0.333738
Target:  5'- cCGAcaaCGgCGaGGGCgugcugugauCACCGCGGCGGCc -3'
miRNA:   3'- -GCUa--GUgGC-CCCG----------GUGGCGCCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 42378 0.66 0.333738
Target:  5'- --cUUACCGGGGUCggccguaucgacGCCGCGGCuGa- -3'
miRNA:   3'- gcuAGUGGCCCCGG------------UGGCGCCGuCgc -5'
12880 5' -63.2 NC_003387.1 + 19971 0.66 0.326134
Target:  5'- uCGAcuUCACaacgcugcccuCGGGGCCGuucuCCGCGGCGcCGu -3'
miRNA:   3'- -GCU--AGUG-----------GCCCCGGU----GGCGCCGUcGC- -5'
12880 5' -63.2 NC_003387.1 + 20106 0.66 0.326134
Target:  5'- uGAUCGCCaGGuaCACCGaCGGCAcCa -3'
miRNA:   3'- gCUAGUGGcCCcgGUGGC-GCCGUcGc -5'
12880 5' -63.2 NC_003387.1 + 26929 0.66 0.326134
Target:  5'- ---cCACCGaGGCCGCCgaGCGGCcgagaaugucgAGCGg -3'
miRNA:   3'- gcuaGUGGCcCCGGUGG--CGCCG-----------UCGC- -5'
12880 5' -63.2 NC_003387.1 + 50179 0.66 0.326134
Target:  5'- gGAUCuGCCGcGGCgACCGCGuGCGGa- -3'
miRNA:   3'- gCUAG-UGGCcCCGgUGGCGC-CGUCgc -5'
12880 5' -63.2 NC_003387.1 + 48631 0.66 0.326134
Target:  5'- aCGG-CGCCGcGGGUCGCgagcaUGCGGCAGa- -3'
miRNA:   3'- -GCUaGUGGC-CCCGGUG-----GCGCCGUCgc -5'
12880 5' -63.2 NC_003387.1 + 40254 0.66 0.31866
Target:  5'- uCGGaCGCCaGGcccgcggccaGGCCGCCGCcagcgaaccucGGCAGCGc -3'
miRNA:   3'- -GCUaGUGG-CC----------CCGGUGGCG-----------CCGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.