miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12880 5' -63.2 NC_003387.1 + 37337 0.65 0.354911
Target:  5'- aCGAgccccCGCCGcGGGCugcgcuaucugcggCACCugucggGCGGCGGCGc -3'
miRNA:   3'- -GCUa----GUGGC-CCCG--------------GUGG------CGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 39094 0.66 0.313505
Target:  5'- aCGGUgGCCGGGuugaacucacccgguGCCAgCGCGgggcugccagacuGCGGCGa -3'
miRNA:   3'- -GCUAgUGGCCC---------------CGGUgGCGC-------------CGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 30881 0.66 0.311315
Target:  5'- gCGGU-AgCGGGGCCAUCGCcGGgaaAGCGu -3'
miRNA:   3'- -GCUAgUgGCCCCGGUGGCG-CCg--UCGC- -5'
12880 5' -63.2 NC_003387.1 + 26573 0.66 0.311315
Target:  5'- uGAcUCcUCGGGGUCagGCCGCGcgaGCGGCGa -3'
miRNA:   3'- gCU-AGuGGCCCCGG--UGGCGC---CGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 19240 0.66 0.311315
Target:  5'- gCGAUCG-CGGGcGCCgACCGCcuCGGCGa -3'
miRNA:   3'- -GCUAGUgGCCC-CGG-UGGCGccGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 24959 0.66 0.311315
Target:  5'- gCGA-CA-CGaGGGCCuCCGCGGUGGUGu -3'
miRNA:   3'- -GCUaGUgGC-CCCGGuGGCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 47186 0.66 0.311315
Target:  5'- uGGUCGCCcucGGGGCUcaggugGCCGcCGGUgucGGCa -3'
miRNA:   3'- gCUAGUGG---CCCCGG------UGGC-GCCG---UCGc -5'
12880 5' -63.2 NC_003387.1 + 48170 0.66 0.316443
Target:  5'- gCGGUCGCgcaGGcgcaGGCCcgcaaggugcccgcACCgGCGGCGGCGg -3'
miRNA:   3'- -GCUAGUGg--CC----CCGG--------------UGG-CGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 22792 0.66 0.31866
Target:  5'- ---aCACUGGauaGGagCACCGUGGCAGCa -3'
miRNA:   3'- gcuaGUGGCC---CCg-GUGGCGCCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 40254 0.66 0.31866
Target:  5'- uCGGaCGCCaGGcccgcggccaGGCCGCCGCcagcgaaccucGGCAGCGc -3'
miRNA:   3'- -GCUaGUGG-CC----------CCGGUGGCG-----------CCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 26929 0.66 0.326134
Target:  5'- ---cCACCGaGGCCGCCgaGCGGCcgagaaugucgAGCGg -3'
miRNA:   3'- gcuaGUGGCcCCGGUGG--CGCCG-----------UCGC- -5'
12880 5' -63.2 NC_003387.1 + 50179 0.66 0.326134
Target:  5'- gGAUCuGCCGcGGCgACCGCGuGCGGa- -3'
miRNA:   3'- gCUAG-UGGCcCCGgUGGCGC-CGUCgc -5'
12880 5' -63.2 NC_003387.1 + 21683 0.66 0.349332
Target:  5'- uCGG-CGCCGGugccgugcuGGCCGCCGCccCGGCGc -3'
miRNA:   3'- -GCUaGUGGCC---------CCGGUGGCGccGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 1000 0.66 0.349332
Target:  5'- ----gACCGGGGUCggaugcGCUGCGGCcuuGCGu -3'
miRNA:   3'- gcuagUGGCCCCGG------UGGCGCCGu--CGC- -5'
12880 5' -63.2 NC_003387.1 + 18216 0.66 0.349332
Target:  5'- gGAUCG-CGGcGCCGCaGCGGCGGgCGu -3'
miRNA:   3'- gCUAGUgGCCcCGGUGgCGCCGUC-GC- -5'
12880 5' -63.2 NC_003387.1 + 42867 0.66 0.341471
Target:  5'- gGAaCACCGcGGuGCC-CgGCGGCgaGGCGa -3'
miRNA:   3'- gCUaGUGGC-CC-CGGuGgCGCCG--UCGC- -5'
12880 5' -63.2 NC_003387.1 + 14080 0.66 0.341471
Target:  5'- uGAUgCGCCGGaacugcagcGCCAgCGCGGCcuGCGg -3'
miRNA:   3'- gCUA-GUGGCCc--------CGGUgGCGCCGu-CGC- -5'
12880 5' -63.2 NC_003387.1 + 28430 0.66 0.333738
Target:  5'- uGAUCACgugauCGGcGcGCaCGCCGaGGCGGCGg -3'
miRNA:   3'- gCUAGUG-----GCC-C-CG-GUGGCgCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 42378 0.66 0.333738
Target:  5'- --cUUACCGGGGUCggccguaucgacGCCGCGGCuGa- -3'
miRNA:   3'- gcuAGUGGCCCCGG------------UGGCGCCGuCgc -5'
12880 5' -63.2 NC_003387.1 + 48631 0.66 0.326134
Target:  5'- aCGG-CGCCGcGGGUCGCgagcaUGCGGCAGa- -3'
miRNA:   3'- -GCUaGUGGC-CCCGGUG-----GCGCCGUCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.