miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12880 5' -63.2 NC_003387.1 + 34197 0.74 0.086444
Target:  5'- gCGAaCGCCuGcGuGCCACCGCGGCGGCc -3'
miRNA:   3'- -GCUaGUGGcC-C-CGGUGGCGCCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 2045 0.74 0.093745
Target:  5'- -cGUCGCCGagcuGGCCGCgGUGGCGGCGc -3'
miRNA:   3'- gcUAGUGGCc---CCGGUGgCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 48225 0.74 0.098933
Target:  5'- cCGGUCGagCGGGGCCuCCGCGggcucggccuucGCGGCGg -3'
miRNA:   3'- -GCUAGUg-GCCCCGGuGGCGC------------CGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 32604 0.73 0.104391
Target:  5'- uCGAUCcuGCUcGGGCuCGCCGCGGgGGCGc -3'
miRNA:   3'- -GCUAG--UGGcCCCG-GUGGCGCCgUCGC- -5'
12880 5' -63.2 NC_003387.1 + 29762 0.73 0.116167
Target:  5'- aCGAUgACCGGGGCgCcccaCGCGGuCAGCu -3'
miRNA:   3'- -GCUAgUGGCCCCG-Gug--GCGCC-GUCGc -5'
12880 5' -63.2 NC_003387.1 + 7308 0.73 0.116167
Target:  5'- --cUCGCCGGGGCCGuacCUGuCGGCuGCGc -3'
miRNA:   3'- gcuAGUGGCCCCGGU---GGC-GCCGuCGC- -5'
12880 5' -63.2 NC_003387.1 + 25972 0.72 0.1258
Target:  5'- cCGAUCGCUGGGGguaugccgcUCGCCGgGGUcGCGa -3'
miRNA:   3'- -GCUAGUGGCCCC---------GGUGGCgCCGuCGC- -5'
12880 5' -63.2 NC_003387.1 + 18497 0.72 0.127139
Target:  5'- cCGAggGCCugcagcaugcucucGGGCCGCCGCGGUGGCa -3'
miRNA:   3'- -GCUagUGGc-------------CCCGGUGGCGCCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 40356 0.72 0.129172
Target:  5'- aGAUUGC--GGGCCGUCGCGGCGGCGu -3'
miRNA:   3'- gCUAGUGgcCCCGGUGGCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 19474 0.72 0.132628
Target:  5'- uGggCGCCGaGGCCACCGCGG--GCGa -3'
miRNA:   3'- gCuaGUGGCcCCGGUGGCGCCguCGC- -5'
12880 5' -63.2 NC_003387.1 + 47270 0.72 0.132628
Target:  5'- uGGUCACCGcuuuGGCCGCCGuCGGC-GCc -3'
miRNA:   3'- gCUAGUGGCc---CCGGUGGC-GCCGuCGc -5'
12880 5' -63.2 NC_003387.1 + 12204 0.72 0.136169
Target:  5'- aGGUCGCUGcucggugccGGGCCACCGgCGGUcgccAGCGc -3'
miRNA:   3'- gCUAGUGGC---------CCCGGUGGC-GCCG----UCGC- -5'
12880 5' -63.2 NC_003387.1 + 26492 0.71 0.139796
Target:  5'- gCGAUCGCCGGGGCgaCGCUGUGaaugaAGCGc -3'
miRNA:   3'- -GCUAGUGGCCCCG--GUGGCGCcg---UCGC- -5'
12880 5' -63.2 NC_003387.1 + 6842 0.71 0.139796
Target:  5'- uCGAUCGCCcgcucGGCCGCgGCGcGCAGCc -3'
miRNA:   3'- -GCUAGUGGcc---CCGGUGgCGC-CGUCGc -5'
12880 5' -63.2 NC_003387.1 + 10609 0.71 0.147318
Target:  5'- aCGGUCGCCucGGUCaugcaggacgcgACCGCGGCGGUGa -3'
miRNA:   3'- -GCUAGUGGccCCGG------------UGGCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 6937 0.71 0.147318
Target:  5'- -cAUCAUCGcGGCCugCGCaGCGGCGg -3'
miRNA:   3'- gcUAGUGGCcCCGGugGCGcCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 29398 0.71 0.147318
Target:  5'- uCGAUCucgcccGCCGGGcgcaggaggagGCCGCCGCaGCGGCc -3'
miRNA:   3'- -GCUAG------UGGCCC-----------CGGUGGCGcCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 3135 0.71 0.151216
Target:  5'- ---nCACUGccaGGCCACCGCccGGCAGCGg -3'
miRNA:   3'- gcuaGUGGCc--CCGGUGGCG--CCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 19988 0.71 0.151216
Target:  5'- cCGaAUCGCCGaGGCCACCGCGcCGuGCGc -3'
miRNA:   3'- -GC-UAGUGGCcCCGGUGGCGCcGU-CGC- -5'
12880 5' -63.2 NC_003387.1 + 3913 0.71 0.151216
Target:  5'- aCGAcCGgCGGGacgauggccGCCGCCGCGGCgaucAGCGg -3'
miRNA:   3'- -GCUaGUgGCCC---------CGGUGGCGCCG----UCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.