miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12880 5' -63.2 NC_003387.1 + 441 0.71 0.163476
Target:  5'- gCGGUUAaguCUGucGCCGCCGCGGCGGCc -3'
miRNA:   3'- -GCUAGU---GGCccCGGUGGCGCCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 628 0.78 0.046017
Target:  5'- gCGAgggCAgCGucGCCGCCGCGGCAGCGa -3'
miRNA:   3'- -GCUa--GUgGCccCGGUGGCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 740 0.81 0.027888
Target:  5'- aGGUgCGCCaGGaugcggucGGCCACCGCGGCAGCGa -3'
miRNA:   3'- gCUA-GUGG-CC--------CCGGUGGCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 863 1.08 0.00021
Target:  5'- gCGAUCACCGGGGCCACCGCGGCAGCGa -3'
miRNA:   3'- -GCUAGUGGCCCCGGUGGCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 1000 0.66 0.349332
Target:  5'- ----gACCGGGGUCggaugcGCUGCGGCcuuGCGu -3'
miRNA:   3'- gcuagUGGCCCCGG------UGGCGCCGu--CGC- -5'
12880 5' -63.2 NC_003387.1 + 1666 0.7 0.185904
Target:  5'- uCGAggaGgUGuGGGCCgguaccgacACCGCGGCGGCGg -3'
miRNA:   3'- -GCUag-UgGC-CCCGG---------UGGCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 1948 0.71 0.155207
Target:  5'- uGAUCcgGCCGcGGGUCugGCCG-GGCAGCGc -3'
miRNA:   3'- gCUAG--UGGC-CCCGG--UGGCgCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 2045 0.74 0.093745
Target:  5'- -cGUCGCCGagcuGGCCGCgGUGGCGGCGc -3'
miRNA:   3'- gcUAGUGGCc---CCGGUGgCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 2527 0.68 0.263505
Target:  5'- uGAgggGCCGGuguuccgcacgcGGUCGCCGCGGCAGa- -3'
miRNA:   3'- gCUag-UGGCC------------CCGGUGGCGCCGUCgc -5'
12880 5' -63.2 NC_003387.1 + 3110 0.81 0.027888
Target:  5'- uCGuaaAUCGGGGCCGCCaGCGGCAGCa -3'
miRNA:   3'- -GCuagUGGCCCCGGUGG-CGCCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 3135 0.71 0.151216
Target:  5'- ---nCACUGccaGGCCACCGCccGGCAGCGg -3'
miRNA:   3'- gcuaGUGGCc--CCGGUGGCG--CCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 3406 0.67 0.283227
Target:  5'- gCGAUCAugcUCGGGGCCGugcCCuCGGCgugcucGGCGa -3'
miRNA:   3'- -GCUAGU---GGCCCCGGU---GGcGCCG------UCGC- -5'
12880 5' -63.2 NC_003387.1 + 3913 0.71 0.151216
Target:  5'- aCGAcCGgCGGGacgauggccGCCGCCGCGGCgaucAGCGg -3'
miRNA:   3'- -GCUaGUgGCCC---------CGGUGGCGCCG----UCGC- -5'
12880 5' -63.2 NC_003387.1 + 3985 0.66 0.349332
Target:  5'- aCGuUC-CCaGGauugaGGCgGCCGUGGCGGCGa -3'
miRNA:   3'- -GCuAGuGG-CC-----CCGgUGGCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 4516 0.71 0.163476
Target:  5'- gGGUCACCucGGCCGCCGCcgccGguGCGg -3'
miRNA:   3'- gCUAGUGGccCCGGUGGCGc---CguCGC- -5'
12880 5' -63.2 NC_003387.1 + 4615 0.7 0.17214
Target:  5'- uGAUCGgCGa-GCCACCGCGggcGCAGCGg -3'
miRNA:   3'- gCUAGUgGCccCGGUGGCGC---CGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 5554 0.77 0.055829
Target:  5'- gCGAcCACCaGGGCCACCGCGGU-GCc -3'
miRNA:   3'- -GCUaGUGGcCCCGGUGGCGCCGuCGc -5'
12880 5' -63.2 NC_003387.1 + 6081 0.69 0.215278
Target:  5'- aCGAcCGCCGGGGCgucgucggcaggcuCGaacaccugcgacaugCGCGGCAGCGg -3'
miRNA:   3'- -GCUaGUGGCCCCG--------------GUg--------------GCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 6422 0.69 0.205758
Target:  5'- gCGGUgACUGcGGGCCagGCCGUcgaggucgugGGCGGCGu -3'
miRNA:   3'- -GCUAgUGGC-CCCGG--UGGCG----------CCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 6842 0.71 0.139796
Target:  5'- uCGAUCGCCcgcucGGCCGCgGCGcGCAGCc -3'
miRNA:   3'- -GCUAGUGGcc---CCGGUGgCGC-CGUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.