miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12880 5' -63.2 NC_003387.1 + 52264 0.91 0.004472
Target:  5'- cCGGUCGCCGucGGCCGCCGCGGCGGCGa -3'
miRNA:   3'- -GCUAGUGGCc-CCGGUGGCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 52223 0.67 0.290056
Target:  5'- gCGGUCGCCacgcGGGcGCgCAUCGCGacgaGCAGCu -3'
miRNA:   3'- -GCUAGUGG----CCC-CG-GUGGCGC----CGUCGc -5'
12880 5' -63.2 NC_003387.1 + 52070 0.79 0.041188
Target:  5'- uCGAaugguUCAUCGGGcgucGCUGCCGCGGCGGCGa -3'
miRNA:   3'- -GCU-----AGUGGCCC----CGGUGGCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 51842 0.7 0.185904
Target:  5'- aGAUCcugACCGGcgucGCUGCCGCGGUGGCc -3'
miRNA:   3'- gCUAG---UGGCCc---CGGUGGCGCCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 51466 0.67 0.297014
Target:  5'- --cUCGCCGGGGUCcgucgGCUuCGGUGGCGu -3'
miRNA:   3'- gcuAGUGGCCCCGG-----UGGcGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 50993 0.68 0.250986
Target:  5'- uCGAUCagcACCGGGaugcGCCGCC-CGGCccgcucAGCGa -3'
miRNA:   3'- -GCUAG---UGGCCC----CGGUGGcGCCG------UCGC- -5'
12880 5' -63.2 NC_003387.1 + 50179 0.66 0.326134
Target:  5'- gGAUCuGCCGcGGCgACCGCGuGCGGa- -3'
miRNA:   3'- gCUAG-UGGCcCCGgUGGCGC-CGUCgc -5'
12880 5' -63.2 NC_003387.1 + 49859 0.68 0.256558
Target:  5'- gGAUCAgCGGGGCgaccuCACCGacgaucaugucguCGGCGuGCGg -3'
miRNA:   3'- gCUAGUgGCCCCG-----GUGGC-------------GCCGU-CGC- -5'
12880 5' -63.2 NC_003387.1 + 49532 0.67 0.3041
Target:  5'- uGcgCuGCUGGuuGGCCuCCGCGGCuGCGa -3'
miRNA:   3'- gCuaG-UGGCC--CCGGuGGCGCCGuCGC- -5'
12880 5' -63.2 NC_003387.1 + 49253 0.67 0.269952
Target:  5'- gCGAuuUCACCuc-GCCGCCGCG-CAGCGa -3'
miRNA:   3'- -GCU--AGUGGcccCGGUGGCGCcGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 49193 0.68 0.244912
Target:  5'- ---cCGCCuGGGGCgGCgGCGGgGGCa -3'
miRNA:   3'- gcuaGUGG-CCCCGgUGgCGCCgUCGc -5'
12880 5' -63.2 NC_003387.1 + 48788 0.7 0.17214
Target:  5'- aGcUCGCCGcuGaUCGCCGCGGCGGCGg -3'
miRNA:   3'- gCuAGUGGCccC-GGUGGCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 48631 0.66 0.326134
Target:  5'- aCGG-CGCCGcGGGUCGCgagcaUGCGGCAGa- -3'
miRNA:   3'- -GCUaGUGGC-CCCGGUG-----GCGCCGUCgc -5'
12880 5' -63.2 NC_003387.1 + 48225 0.74 0.098933
Target:  5'- cCGGUCGagCGGGGCCuCCGCGggcucggccuucGCGGCGg -3'
miRNA:   3'- -GCUAGUg-GCCCCGGuGGCGC------------CGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 48170 0.66 0.316443
Target:  5'- gCGGUCGCgcaGGcgcaGGCCcgcaaggugcccgcACCgGCGGCGGCGg -3'
miRNA:   3'- -GCUAGUGg--CC----CCGG--------------UGG-CGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 47946 0.66 0.34854
Target:  5'- aCGA-CGCCGuguGGGCCgcgaagcACCGCGaGCugGGCGg -3'
miRNA:   3'- -GCUaGUGGC---CCCGG-------UGGCGC-CG--UCGC- -5'
12880 5' -63.2 NC_003387.1 + 47270 0.72 0.132628
Target:  5'- uGGUCACCGcuuuGGCCGCCGuCGGC-GCc -3'
miRNA:   3'- gCUAGUGGCc---CCGGUGGC-GCCGuCGc -5'
12880 5' -63.2 NC_003387.1 + 47186 0.66 0.311315
Target:  5'- uGGUCGCCcucGGGGCUcaggugGCCGcCGGUgucGGCa -3'
miRNA:   3'- gCUAGUGG---CCCCGG------UGGC-GCCG---UCGc -5'
12880 5' -63.2 NC_003387.1 + 46935 0.69 0.205758
Target:  5'- cCGggCACCGaGGuGUCGauCCGCGGCgAGCGc -3'
miRNA:   3'- -GCuaGUGGC-CC-CGGU--GGCGCCG-UCGC- -5'
12880 5' -63.2 NC_003387.1 + 45863 0.68 0.250986
Target:  5'- gCGAgcugCugCGGcuGCgCGCCGCGGCcgAGCGg -3'
miRNA:   3'- -GCUa---GugGCCc-CG-GUGGCGCCG--UCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.