miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12880 5' -63.2 NC_003387.1 + 22060 0.78 0.044637
Target:  5'- gCGAUCACCGGcaccguuGGCgACgGCGGUAGCGc -3'
miRNA:   3'- -GCUAGUGGCC-------CCGgUGgCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 18290 0.7 0.17214
Target:  5'- uCGAccagCGCCGacccGGCCGCgGCGGUGGCGc -3'
miRNA:   3'- -GCUa---GUGGCc---CCGGUGgCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 40508 0.7 0.181211
Target:  5'- gCGAcCGCCGGuGGCCcggcACCGa-GCAGCGa -3'
miRNA:   3'- -GCUaGUGGCC-CCGG----UGGCgcCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 37337 0.65 0.354911
Target:  5'- aCGAgccccCGCCGcGGGCugcgcuaucugcggCACCugucggGCGGCGGCGc -3'
miRNA:   3'- -GCUa----GUGGC-CCCG--------------GUGG------CGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 28407 0.77 0.055829
Target:  5'- aCGAUCGCCGagcagacccGGCUGCUGCGGCGGCu -3'
miRNA:   3'- -GCUAGUGGCc--------CCGGUGGCGCCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 25181 0.77 0.058987
Target:  5'- gCGGUgGCCccGGcgccGCCGCCGCGGCAGCGc -3'
miRNA:   3'- -GCUAgUGG--CCc---CGGUGGCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 44978 0.75 0.081881
Target:  5'- gCGAUCGCCGcuGCCGCCGaGGCGGUGc -3'
miRNA:   3'- -GCUAGUGGCccCGGUGGCgCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 34197 0.74 0.086444
Target:  5'- gCGAaCGCCuGcGuGCCACCGCGGCGGCc -3'
miRNA:   3'- -GCUaGUGGcC-C-CGGUGGCGCCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 7308 0.73 0.116167
Target:  5'- --cUCGCCGGGGCCGuacCUGuCGGCuGCGc -3'
miRNA:   3'- gcuAGUGGCCCCGGU---GGC-GCCGuCGC- -5'
12880 5' -63.2 NC_003387.1 + 12404 0.7 0.17214
Target:  5'- gCGAUCAacuCCGGuGcGCCGCUGUGGgAGCu -3'
miRNA:   3'- -GCUAGU---GGCC-C-CGGUGGCGCCgUCGc -5'
12880 5' -63.2 NC_003387.1 + 29398 0.71 0.147318
Target:  5'- uCGAUCucgcccGCCGGGcgcaggaggagGCCGCCGCaGCGGCc -3'
miRNA:   3'- -GCUAG------UGGCCC-----------CGGUGGCGcCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 32604 0.73 0.104391
Target:  5'- uCGAUCcuGCUcGGGCuCGCCGCGGgGGCGc -3'
miRNA:   3'- -GCUAG--UGGcCCCG-GUGGCGCCgUCGC- -5'
12880 5' -63.2 NC_003387.1 + 628 0.78 0.046017
Target:  5'- gCGAgggCAgCGucGCCGCCGCGGCAGCGa -3'
miRNA:   3'- -GCUa--GUgGCccCGGUGGCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 10609 0.71 0.147318
Target:  5'- aCGGUCGCCucGGUCaugcaggacgcgACCGCGGCGGUGa -3'
miRNA:   3'- -GCUAGUGGccCCGG------------UGGCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 13622 0.78 0.04986
Target:  5'- uGG-CACCGGgugaguucaacccGGCCACCGuCGGCGGCGg -3'
miRNA:   3'- gCUaGUGGCC-------------CCGGUGGC-GCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 2045 0.74 0.093745
Target:  5'- -cGUCGCCGagcuGGCCGCgGUGGCGGCGc -3'
miRNA:   3'- gcUAGUGGCc---CCGGUGgCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 441 0.71 0.163476
Target:  5'- gCGGUUAaguCUGucGCCGCCGCGGCGGCc -3'
miRNA:   3'- -GCUAGU---GGCccCGGUGGCGCCGUCGc -5'
12880 5' -63.2 NC_003387.1 + 48788 0.7 0.17214
Target:  5'- aGcUCGCCGcuGaUCGCCGCGGCGGCGg -3'
miRNA:   3'- gCuAGUGGCccC-GGUGGCGCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 40365 0.77 0.054312
Target:  5'- uGAUCgcgGCCGGGGCCAagggccucgaCGuCGGCGGCGa -3'
miRNA:   3'- gCUAG---UGGCCCCGGUg---------GC-GCCGUCGC- -5'
12880 5' -63.2 NC_003387.1 + 41974 0.75 0.073436
Target:  5'- gGAgcugCGCgCGGaGGCCGCCGCGGUgcucaAGCGg -3'
miRNA:   3'- gCUa---GUG-GCC-CCGGUGGCGCCG-----UCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.