miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12882 5' -62.8 NC_003387.1 + 23478 0.67 0.30695
Target:  5'- aCGaCCCGCCguUCGAgcgGCGGUucuggUGCCCg-- -3'
miRNA:   3'- -GC-GGGCGG--AGCUa--CGCCA-----GCGGGagc -5'
12882 5' -62.8 NC_003387.1 + 24288 0.67 0.299822
Target:  5'- gGCCaauuCGUC-CGGUGCGGUgCGCCgUCa -3'
miRNA:   3'- gCGG----GCGGaGCUACGCCA-GCGGgAGc -5'
12882 5' -62.8 NC_003387.1 + 24830 0.72 0.145166
Target:  5'- uGCUCGgCUUGGccggugccguUGCGG-CGCCCUCGa -3'
miRNA:   3'- gCGGGCgGAGCU----------ACGCCaGCGGGAGC- -5'
12882 5' -62.8 NC_003387.1 + 24871 0.69 0.229768
Target:  5'- gGCUCGaCCUCGG-GCGGUggcugCGCCCUg- -3'
miRNA:   3'- gCGGGC-GGAGCUaCGCCA-----GCGGGAgc -5'
12882 5' -62.8 NC_003387.1 + 25168 0.69 0.235519
Target:  5'- gGUUCGgCUCGgcGCGGUgGCCC-CGg -3'
miRNA:   3'- gCGGGCgGAGCuaCGCCAgCGGGaGC- -5'
12882 5' -62.8 NC_003387.1 + 25743 0.69 0.229768
Target:  5'- uGCCCgaGCCgaCGGUGUaaauGUCGCCCUUGg -3'
miRNA:   3'- gCGGG--CGGa-GCUACGc---CAGCGGGAGC- -5'
12882 5' -62.8 NC_003387.1 + 26007 0.66 0.341401
Target:  5'- aGCaCCGCCUCGAcgaggccgcgcugGUGGUcggugagcgcgcCGCCCUgGa -3'
miRNA:   3'- gCG-GGCGGAGCUa------------CGCCA------------GCGGGAgC- -5'
12882 5' -62.8 NC_003387.1 + 26131 0.67 0.299822
Target:  5'- aGCCuCGCgaaugugguaCUCGAugUGCGG-CGCCgUCGg -3'
miRNA:   3'- gCGG-GCG----------GAGCU--ACGCCaGCGGgAGC- -5'
12882 5' -62.8 NC_003387.1 + 26842 0.66 0.376889
Target:  5'- gGCCUGCUcggCGAgcUGUGGaUGCaCCUCGg -3'
miRNA:   3'- gCGGGCGGa--GCU--ACGCCaGCG-GGAGC- -5'
12882 5' -62.8 NC_003387.1 + 27697 0.68 0.253499
Target:  5'- aCGCCaGCCggUCGGUGUcGUCgagGCCCUCGu -3'
miRNA:   3'- -GCGGgCGG--AGCUACGcCAG---CGGGAGC- -5'
12882 5' -62.8 NC_003387.1 + 28891 0.68 0.272592
Target:  5'- gCGCCgaGUCcCGgcGCGG-CGCCCUCa -3'
miRNA:   3'- -GCGGg-CGGaGCuaCGCCaGCGGGAGc -5'
12882 5' -62.8 NC_003387.1 + 29425 0.67 0.30695
Target:  5'- aGgCCGCCgcagCGGcccgcGCGGUCGCuauCCUCGc -3'
miRNA:   3'- gCgGGCGGa---GCUa----CGCCAGCG---GGAGC- -5'
12882 5' -62.8 NC_003387.1 + 30225 0.69 0.237853
Target:  5'- gGCCUggucgagggugGCCUCGGUGCGGcCacggucgaagcucagGCCCUUGc -3'
miRNA:   3'- gCGGG-----------CGGAGCUACGCCaG---------------CGGGAGC- -5'
12882 5' -62.8 NC_003387.1 + 31608 0.68 0.272592
Target:  5'- gGCCCGCCUCGGUauucGUGaccgcacCGCCCUgGc -3'
miRNA:   3'- gCGGGCGGAGCUA----CGCca-----GCGGGAgC- -5'
12882 5' -62.8 NC_003387.1 + 32338 0.66 0.368609
Target:  5'- aCGCCUugucgGCCUCGGcgacggccagGCGGUCgGCCagCUCGu -3'
miRNA:   3'- -GCGGG-----CGGAGCUa---------CGCCAG-CGG--GAGC- -5'
12882 5' -62.8 NC_003387.1 + 32908 0.66 0.335982
Target:  5'- cCGcCCCGCCccgCGGUGCGGgcugCGCUgagauugCUUGa -3'
miRNA:   3'- -GC-GGGCGGa--GCUACGCCa---GCGG-------GAGC- -5'
12882 5' -62.8 NC_003387.1 + 33128 0.7 0.207939
Target:  5'- gGCgCGCaCcCGGUGCGGcacggUGCCCUCGu -3'
miRNA:   3'- gCGgGCG-GaGCUACGCCa----GCGGGAGC- -5'
12882 5' -62.8 NC_003387.1 + 34199 0.72 0.149007
Target:  5'- uCGCCCGCCUCGGUgGCGcUCGUuuCgUCGu -3'
miRNA:   3'- -GCGGGCGGAGCUA-CGCcAGCG--GgAGC- -5'
12882 5' -62.8 NC_003387.1 + 34504 0.69 0.235519
Target:  5'- aCGCCCGCCgc--UGCGG-CGCcgcgauCCUCGg -3'
miRNA:   3'- -GCGGGCGGagcuACGCCaGCG------GGAGC- -5'
12882 5' -62.8 NC_003387.1 + 34971 0.69 0.224135
Target:  5'- uGCCCGCCUUGGUGCcgccGGUCGgUgaCa -3'
miRNA:   3'- gCGGGCGGAGCUACG----CCAGCgGgaGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.