miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12882 5' -62.8 NC_003387.1 + 119 1.07 0.000293
Target:  5'- gCGCCCGCCUCGAUGCGGUCGCCCUCGc -3'
miRNA:   3'- -GCGGGCGGAGCUACGCCAGCGGGAGC- -5'
12882 5' -62.8 NC_003387.1 + 2577 0.66 0.374392
Target:  5'- aCGCCgacccgucggucgaCGCCUgGccGCaGUaCGCCCUCGa -3'
miRNA:   3'- -GCGG--------------GCGGAgCuaCGcCA-GCGGGAGC- -5'
12882 5' -62.8 NC_003387.1 + 3061 0.66 0.360454
Target:  5'- cCGCCCGCCUCGGU-CGaGcCGUacaaccugauCCUUGa -3'
miRNA:   3'- -GCGGGCGGAGCUAcGC-CaGCG----------GGAGC- -5'
12882 5' -62.8 NC_003387.1 + 3342 0.7 0.187926
Target:  5'- gGCCCGCUcguUUGgcGCGGUCGUCgaCGg -3'
miRNA:   3'- gCGGGCGG---AGCuaCGCCAGCGGgaGC- -5'
12882 5' -62.8 NC_003387.1 + 4478 0.68 0.253499
Target:  5'- aGCCCGCCgcgaaggcCGAgcccGCGGagGCCCcgcUCGa -3'
miRNA:   3'- gCGGGCGGa-------GCUa---CGCCagCGGG---AGC- -5'
12882 5' -62.8 NC_003387.1 + 5896 0.67 0.285952
Target:  5'- cCGcCCCGCCUUGcgcGgGGUUGCgCUUCGg -3'
miRNA:   3'- -GC-GGGCGGAGCua-CgCCAGCG-GGAGC- -5'
12882 5' -62.8 NC_003387.1 + 6384 0.69 0.24139
Target:  5'- aGCCCGCCUCG-UG-GGUUuCCC-CGg -3'
miRNA:   3'- gCGGGCGGAGCuACgCCAGcGGGaGC- -5'
12882 5' -62.8 NC_003387.1 + 8373 0.68 0.266103
Target:  5'- gCGCCgCGCCggUGAUcCacacGUCGCCCUCGg -3'
miRNA:   3'- -GCGG-GCGGa-GCUAcGc---CAGCGGGAGC- -5'
12882 5' -62.8 NC_003387.1 + 9125 0.67 0.317146
Target:  5'- gGCCCGCCUucugcgcgaucugcgCGAccugGCGGaucaucUUGUCCUCGu -3'
miRNA:   3'- gCGGGCGGA---------------GCUa---CGCC------AGCGGGAGC- -5'
12882 5' -62.8 NC_003387.1 + 9456 0.77 0.059774
Target:  5'- uGCCCGCCUCGGg--GGUCG-CCUCGg -3'
miRNA:   3'- gCGGGCGGAGCUacgCCAGCgGGAGC- -5'
12882 5' -62.8 NC_003387.1 + 10052 0.66 0.368609
Target:  5'- gGUgCGCCcUGcgGCGGauucuuaugcgCGCCCUCGg -3'
miRNA:   3'- gCGgGCGGaGCuaCGCCa----------GCGGGAGC- -5'
12882 5' -62.8 NC_003387.1 + 10249 0.67 0.329109
Target:  5'- aGCCgCGCCgagCGcgGgcucaaGGUCGCCC-CGa -3'
miRNA:   3'- gCGG-GCGGa--GCuaCg-----CCAGCGGGaGC- -5'
12882 5' -62.8 NC_003387.1 + 10320 0.66 0.344525
Target:  5'- aGCCCGCgCUCGgcGCGGcucaUCGCgUcgCGg -3'
miRNA:   3'- gCGGGCG-GAGCuaCGCC----AGCGgGa-GC- -5'
12882 5' -62.8 NC_003387.1 + 10684 0.68 0.279208
Target:  5'- aCGgCCGCCUCGGcgGUGGcCGCCgguaUCa -3'
miRNA:   3'- -GCgGGCGGAGCUa-CGCCaGCGGg---AGc -5'
12882 5' -62.8 NC_003387.1 + 12923 0.73 0.111466
Target:  5'- gGCCCGCC--GGUGCGGUguccacgcCGCCCUuCGg -3'
miRNA:   3'- gCGGGCGGagCUACGCCA--------GCGGGA-GC- -5'
12882 5' -62.8 NC_003387.1 + 13265 0.66 0.368609
Target:  5'- uGCCgCGCuuCUCGAUcGCgucggccaGGUCGCgCUCGg -3'
miRNA:   3'- gCGG-GCG--GAGCUA-CG--------CCAGCGgGAGC- -5'
12882 5' -62.8 NC_003387.1 + 13751 0.66 0.360454
Target:  5'- aCGCCgacauaGCgUCGA--CGG-CGCCCUCGg -3'
miRNA:   3'- -GCGGg-----CGgAGCUacGCCaGCGGGAGC- -5'
12882 5' -62.8 NC_003387.1 + 19255 0.67 0.285952
Target:  5'- aCGUgCCGUUagCGAccgUGCGGgccgCGCCCUCGa -3'
miRNA:   3'- -GCG-GGCGGa-GCU---ACGCCa---GCGGGAGC- -5'
12882 5' -62.8 NC_003387.1 + 20751 0.67 0.299822
Target:  5'- -aCCUGUgCUCGAUGCGccugcaaggcgcGUCgGCCCUCGg -3'
miRNA:   3'- gcGGGCG-GAGCUACGC------------CAG-CGGGAGC- -5'
12882 5' -62.8 NC_003387.1 + 21032 0.67 0.299822
Target:  5'- uGCCCGCCccugcccgGAUGaCGc-CGCCCUCGg -3'
miRNA:   3'- gCGGGCGGag------CUAC-GCcaGCGGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.