miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12882 5' -62.8 NC_003387.1 + 119 1.07 0.000293
Target:  5'- gCGCCCGCCUCGAUGCGGUCGCCCUCGc -3'
miRNA:   3'- -GCGGGCGGAGCUACGCCAGCGGGAGC- -5'
12882 5' -62.8 NC_003387.1 + 48454 0.81 0.029918
Target:  5'- gGCCCGCUUgCGaAUGUGGUUGCCCUUGg -3'
miRNA:   3'- gCGGGCGGA-GC-UACGCCAGCGGGAGC- -5'
12882 5' -62.8 NC_003387.1 + 9456 0.77 0.059774
Target:  5'- uGCCCGCCUCGGg--GGUCG-CCUCGg -3'
miRNA:   3'- gCGGGCGGAGCUacgCCAGCgGGAGC- -5'
12882 5' -62.8 NC_003387.1 + 40678 0.77 0.059774
Target:  5'- gGCCCGCCUCGAaaUGCGGUgUGCUaCUUGa -3'
miRNA:   3'- gCGGGCGGAGCU--ACGCCA-GCGG-GAGC- -5'
12882 5' -62.8 NC_003387.1 + 42259 0.77 0.064718
Target:  5'- aCGCCCGCCUCGuUGaggcgcuCGGUCaGCuCCUCGa -3'
miRNA:   3'- -GCGGGCGGAGCuAC-------GCCAG-CG-GGAGC- -5'
12882 5' -62.8 NC_003387.1 + 12923 0.73 0.111466
Target:  5'- gGCCCGCC--GGUGCGGUguccacgcCGCCCUuCGg -3'
miRNA:   3'- gCGGGCGGagCUACGCCA--------GCGGGA-GC- -5'
12882 5' -62.8 NC_003387.1 + 47167 0.72 0.130692
Target:  5'- gGCaCCGCggUGGcccugGUGGUCGCCCUCGg -3'
miRNA:   3'- gCG-GGCGgaGCUa----CGCCAGCGGGAGC- -5'
12882 5' -62.8 NC_003387.1 + 37987 0.72 0.137755
Target:  5'- uGCCgaGCCacgCGGgcaGCgGGUCGCCCUCGg -3'
miRNA:   3'- gCGGg-CGGa--GCUa--CG-CCAGCGGGAGC- -5'
12882 5' -62.8 NC_003387.1 + 24830 0.72 0.145166
Target:  5'- uGCUCGgCUUGGccggugccguUGCGG-CGCCCUCGa -3'
miRNA:   3'- gCGGGCgGAGCU----------ACGCCaGCGGGAGC- -5'
12882 5' -62.8 NC_003387.1 + 34199 0.72 0.149007
Target:  5'- uCGCCCGCCUCGGUgGCGcUCGUuuCgUCGu -3'
miRNA:   3'- -GCGGGCGGAGCUA-CGCcAGCG--GgAGC- -5'
12882 5' -62.8 NC_003387.1 + 48305 0.71 0.169627
Target:  5'- cCGCCCGCCUCGAcgaaaucgagGCGG-CGCgCgagCGc -3'
miRNA:   3'- -GCGGGCGGAGCUa---------CGCCaGCGgGa--GC- -5'
12882 5' -62.8 NC_003387.1 + 44763 0.71 0.178569
Target:  5'- cCGCCCGCCgUGAaGCGGccCGaCCUCGa -3'
miRNA:   3'- -GCGGGCGGaGCUaCGCCa-GCgGGAGC- -5'
12882 5' -62.8 NC_003387.1 + 3342 0.7 0.187926
Target:  5'- gGCCCGCUcguUUGgcGCGGUCGUCgaCGg -3'
miRNA:   3'- gCGGGCGG---AGCuaCGCCAGCGGgaGC- -5'
12882 5' -62.8 NC_003387.1 + 40629 0.7 0.197712
Target:  5'- gCGCCucgaaCGCCUCGGg--GGUcaCGCCCUCGg -3'
miRNA:   3'- -GCGG-----GCGGAGCUacgCCA--GCGGGAGC- -5'
12882 5' -62.8 NC_003387.1 + 33128 0.7 0.207939
Target:  5'- gGCgCGCaCcCGGUGCGGcacggUGCCCUCGu -3'
miRNA:   3'- gCGgGCG-GaGCUACGCCa----GCGGGAGC- -5'
12882 5' -62.8 NC_003387.1 + 52057 0.69 0.218621
Target:  5'- gGUgCGCCagGAUGCGGUCGgCCaccgCGg -3'
miRNA:   3'- gCGgGCGGagCUACGCCAGCgGGa---GC- -5'
12882 5' -62.8 NC_003387.1 + 41752 0.69 0.224135
Target:  5'- gGCUgGCCgCGGUGUGGUgCGaCCUCGa -3'
miRNA:   3'- gCGGgCGGaGCUACGCCA-GCgGGAGC- -5'
12882 5' -62.8 NC_003387.1 + 34971 0.69 0.224135
Target:  5'- uGCCCGCCUUGGUGCcgccGGUCGgUgaCa -3'
miRNA:   3'- gCGGGCGGAGCUACG----CCAGCgGgaGc -5'
12882 5' -62.8 NC_003387.1 + 47025 0.69 0.229768
Target:  5'- cCGgCCGCgCUCGccGCGGaUCGacaCCUCGg -3'
miRNA:   3'- -GCgGGCG-GAGCuaCGCC-AGCg--GGAGC- -5'
12882 5' -62.8 NC_003387.1 + 43913 0.69 0.229768
Target:  5'- uGCaCCGCCcCGAccuCGGccUCGCCCUCGc -3'
miRNA:   3'- gCG-GGCGGaGCUac-GCC--AGCGGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.