miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12882 5' -62.8 NC_003387.1 + 46993 0.66 0.376889
Target:  5'- uGCCCGgCUCaagcGUGCGGcCGUgcacgacgaCCUCGg -3'
miRNA:   3'- gCGGGCgGAGc---UACGCCaGCG---------GGAGC- -5'
12882 5' -62.8 NC_003387.1 + 26842 0.66 0.376889
Target:  5'- gGCCUGCUcggCGAgcUGUGGaUGCaCCUCGg -3'
miRNA:   3'- gCGGGCGGa--GCU--ACGCCaGCG-GGAGC- -5'
12882 5' -62.8 NC_003387.1 + 2577 0.66 0.374392
Target:  5'- aCGCCgacccgucggucgaCGCCUgGccGCaGUaCGCCCUCGa -3'
miRNA:   3'- -GCGG--------------GCGGAgCuaCGcCA-GCGGGAGC- -5'
12882 5' -62.8 NC_003387.1 + 35630 0.66 0.368609
Target:  5'- aGCCCGCCgaggCGGccggGCGGgcacuggcCGaCCUCGa -3'
miRNA:   3'- gCGGGCGGa---GCUa---CGCCa-------GCgGGAGC- -5'
12882 5' -62.8 NC_003387.1 + 3061 0.66 0.360454
Target:  5'- cCGCCCGCCUCGGU-CGaGcCGUacaaccugauCCUUGa -3'
miRNA:   3'- -GCGGGCGGAGCUAcGC-CaGCG----------GGAGC- -5'
12882 5' -62.8 NC_003387.1 + 46638 0.66 0.360454
Target:  5'- aGCCUGCCgaCGAcgccccgGCGGUCGUCauggugcgCUCGa -3'
miRNA:   3'- gCGGGCGGa-GCUa------CGCCAGCGG--------GAGC- -5'
12882 5' -62.8 NC_003387.1 + 32908 0.66 0.335982
Target:  5'- cCGcCCCGCCccgCGGUGCGGgcugCGCUgagauugCUUGa -3'
miRNA:   3'- -GC-GGGCGGa--GCUACGCCa---GCGG-------GAGC- -5'
12882 5' -62.8 NC_003387.1 + 26007 0.66 0.341401
Target:  5'- aGCaCCGCCUCGAcgaggccgcgcugGUGGUcggugagcgcgcCGCCCUgGa -3'
miRNA:   3'- gCG-GGCGGAGCUa------------CGCCA------------GCGGGAgC- -5'
12882 5' -62.8 NC_003387.1 + 10320 0.66 0.344525
Target:  5'- aGCCCGCgCUCGgcGCGGcucaUCGCgUcgCGg -3'
miRNA:   3'- gCGGGCG-GAGCuaCGCC----AGCGgGa-GC- -5'
12882 5' -62.8 NC_003387.1 + 13751 0.66 0.360454
Target:  5'- aCGCCgacauaGCgUCGA--CGG-CGCCCUCGg -3'
miRNA:   3'- -GCGGg-----CGgAGCUacGCCaGCGGGAGC- -5'
12882 5' -62.8 NC_003387.1 + 42298 0.66 0.368609
Target:  5'- uCGCCCaUCgCGGUGCgccGGUCGCCgUCc -3'
miRNA:   3'- -GCGGGcGGaGCUACG---CCAGCGGgAGc -5'
12882 5' -62.8 NC_003387.1 + 10052 0.66 0.368609
Target:  5'- gGUgCGCCcUGcgGCGGauucuuaugcgCGCCCUCGg -3'
miRNA:   3'- gCGgGCGGaGCuaCGCCa----------GCGGGAGC- -5'
12882 5' -62.8 NC_003387.1 + 13265 0.66 0.368609
Target:  5'- uGCCgCGCuuCUCGAUcGCgucggccaGGUCGCgCUCGg -3'
miRNA:   3'- gCGG-GCG--GAGCUA-CG--------CCAGCGgGAGC- -5'
12882 5' -62.8 NC_003387.1 + 32338 0.66 0.368609
Target:  5'- aCGCCUugucgGCCUCGGcgacggccagGCGGUCgGCCagCUCGu -3'
miRNA:   3'- -GCGGG-----CGGAGCUa---------CGCCAG-CGG--GAGC- -5'
12882 5' -62.8 NC_003387.1 + 35700 0.66 0.368609
Target:  5'- cCGgCCGCCUCG--GCGG--GCuCCUCGg -3'
miRNA:   3'- -GCgGGCGGAGCuaCGCCagCG-GGAGC- -5'
12882 5' -62.8 NC_003387.1 + 5896 0.67 0.285952
Target:  5'- cCGcCCCGCCUUGcgcGgGGUUGCgCUUCGg -3'
miRNA:   3'- -GC-GGGCGGAGCua-CgCCAGCG-GGAGC- -5'
12882 5' -62.8 NC_003387.1 + 41035 0.67 0.30695
Target:  5'- aGCUCgGCCUCGAUcGCGucgCGCaCCUUGg -3'
miRNA:   3'- gCGGG-CGGAGCUA-CGCca-GCG-GGAGC- -5'
12882 5' -62.8 NC_003387.1 + 45208 0.67 0.314207
Target:  5'- gCGCCgCGCCUCGAaaUGCG-UCa-CCUCGu -3'
miRNA:   3'- -GCGG-GCGGAGCU--ACGCcAGcgGGAGC- -5'
12882 5' -62.8 NC_003387.1 + 9125 0.67 0.317146
Target:  5'- gGCCCGCCUucugcgcgaucugcgCGAccugGCGGaucaucUUGUCCUCGu -3'
miRNA:   3'- gCGGGCGGA---------------GCUa---CGCC------AGCGGGAGC- -5'
12882 5' -62.8 NC_003387.1 + 47062 0.67 0.321593
Target:  5'- gGCCCGCgCUCGucGUcGUCGCCCg-- -3'
miRNA:   3'- gCGGGCG-GAGCuaCGcCAGCGGGagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.